miRNA display CGI


Results 1 - 20 of 804 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 58427 0.76 0.172955
Target:  5'- gGCGGCGgGAC-CCGgccAGGAuCGCCGUGa -3'
miRNA:   3'- gCGCCGCgCUGcGGC---UCCU-GCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 152798 0.77 0.13281
Target:  5'- cCGCGucGCcgGCGGCGCCGAGGcCGCCGUc -3'
miRNA:   3'- -GCGC--CG--CGCUGCGGCUCCuGCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 116163 0.77 0.13281
Target:  5'- cCGCGGCGCGGCaucgguauGCCGGGGccGCGCCa-- -3'
miRNA:   3'- -GCGCCGCGCUG--------CGGCUCC--UGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 129420 0.77 0.139408
Target:  5'- gGCGGCGCGGCGgCGGGGcCGCgCGg- -3'
miRNA:   3'- gCGCCGCGCUGCgGCUCCuGCG-GCac -5'
21558 5' -63.5 NC_004812.1 + 94027 0.77 0.145953
Target:  5'- aCGCGGCGCGAUgggGUCGggugugaAGGACGCCGa- -3'
miRNA:   3'- -GCGCCGCGCUG---CGGC-------UCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 50443 0.77 0.149869
Target:  5'- uGCGGCGCGAgGCCGccGAgGCCGa- -3'
miRNA:   3'- gCGCCGCGCUgCGGCucCUgCGGCac -5'
21558 5' -63.5 NC_004812.1 + 151712 0.77 0.149869
Target:  5'- gGCGGCGCGcgcGCGCCGccGugGCCGg- -3'
miRNA:   3'- gCGCCGCGC---UGCGGCucCugCGGCac -5'
21558 5' -63.5 NC_004812.1 + 4168 0.77 0.151317
Target:  5'- uGCGuGCGCaagacccgccacgugGACGCCGAGGGCGCCc-- -3'
miRNA:   3'- gCGC-CGCG---------------CUGCGGCUCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 98391 0.77 0.153512
Target:  5'- gGCGGCGCGGCgGCCGcGGGgcgGCGCCGc- -3'
miRNA:   3'- gCGCCGCGCUG-CGGC-UCC---UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 155111 0.78 0.130887
Target:  5'- gGCGGCGCGggccggccgGCgcuccgccgccgcccGCCGAGGACGCCGg- -3'
miRNA:   3'- gCGCCGCGC---------UG---------------CGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 97148 0.78 0.12962
Target:  5'- cCGCGGuCGCGugguugauCGCCGGGGuCGUCGUGg -3'
miRNA:   3'- -GCGCC-GCGCu-------GCGGCUCCuGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 65761 0.78 0.117556
Target:  5'- cCGCGGCGCcggcuuccGCGCCGcGGGCGCCGg- -3'
miRNA:   3'- -GCGCCGCGc-------UGCGGCuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 130897 0.87 0.03008
Target:  5'- uCGCGGCGCGGgGCCGGGGGCGUCGc- -3'
miRNA:   3'- -GCGCCGCGCUgCGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 71909 0.86 0.033336
Target:  5'- gGCGGCGCGGCGCCGcGGGCGCUGc- -3'
miRNA:   3'- gCGCCGCGCUGCGGCuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 48298 0.83 0.055545
Target:  5'- cCGCGGCG-GugGCCGAGGAgGCCGa- -3'
miRNA:   3'- -GCGCCGCgCugCGGCUCCUgCGGCac -5'
21558 5' -63.5 NC_004812.1 + 67315 0.81 0.081064
Target:  5'- gCGCGaaGCGCGACGCCGGGGcuccGCGCCGc- -3'
miRNA:   3'- -GCGC--CGCGCUGCGGCUCC----UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 127752 0.79 0.10141
Target:  5'- gCGCGGCGCGGCGgCGGGGuccGCGUCGg- -3'
miRNA:   3'- -GCGCCGCGCUGCgGCUCC---UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 109321 0.79 0.106021
Target:  5'- gGCGGCgcuggagGCGGCGCCGcgcuaccGGGGCGCCGUa -3'
miRNA:   3'- gCGCCG-------CGCUGCGGC-------UCCUGCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 19887 0.79 0.111924
Target:  5'- aGCGGCGCGGCgGCgGGGGACGCgGc- -3'
miRNA:   3'- gCGCCGCGCUG-CGgCUCCUGCGgCac -5'
21558 5' -63.5 NC_004812.1 + 115433 0.79 0.111924
Target:  5'- -cCGGCGCGGCGCCGAGaGCGCC-UGg -3'
miRNA:   3'- gcGCCGCGCUGCGGCUCcUGCGGcAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.