miRNA display CGI


Results 21 - 40 of 804 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 2443 0.75 0.18133
Target:  5'- gCGCGGUGCGAgugcgccuCGCCGcggcggaaguccGGGGCGCCGg- -3'
miRNA:   3'- -GCGCCGCGCU--------GCGGC------------UCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 2452 0.7 0.392792
Target:  5'- cCGauaGGCGCcg-GCCGAGGACGCCc-- -3'
miRNA:   3'- -GCg--CCGCGcugCGGCUCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 2517 0.68 0.521934
Target:  5'- gGCGGCGCGGcCGUCGAgcgcGGGCaGCaCGg- -3'
miRNA:   3'- gCGCCGCGCU-GCGGCU----CCUG-CG-GCac -5'
21558 5' -63.5 NC_004812.1 + 2603 0.67 0.56868
Target:  5'- uGCGcGCGCGguaGCGCaCGuuGGCGCCGc- -3'
miRNA:   3'- gCGC-CGCGC---UGCG-GCucCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 2676 0.68 0.494605
Target:  5'- gGCGGCcuCGACGCgcgCGAaGACGCCGg- -3'
miRNA:   3'- gCGCCGc-GCUGCG---GCUcCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 2852 1.07 0.001052
Target:  5'- aCGCGGCGCGACGCCGAGGACGCCGUGc -3'
miRNA:   3'- -GCGCCGCGCUGCGGCUCCUGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 2889 0.72 0.2926
Target:  5'- gGCGGCgGCGGCgagcagGCCGAGGuacucgacgGCGCCGg- -3'
miRNA:   3'- gCGCCG-CGCUG------CGGCUCC---------UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3029 0.66 0.60681
Target:  5'- aCGCGGacaGCGACGaggacagcgaCGAGGACGaggaCGa- -3'
miRNA:   3'- -GCGCCg--CGCUGCg---------GCUCCUGCg---GCac -5'
21558 5' -63.5 NC_004812.1 + 3095 0.67 0.56868
Target:  5'- gGCGG-GCGGgGCgGGGGagGCGCCGc- -3'
miRNA:   3'- gCGCCgCGCUgCGgCUCC--UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3200 0.73 0.250498
Target:  5'- gGCGGCGCGGCGCagcgggccCGAGG-CGCgCGg- -3'
miRNA:   3'- gCGCCGCGCUGCG--------GCUCCuGCG-GCac -5'
21558 5' -63.5 NC_004812.1 + 3390 0.68 0.494605
Target:  5'- uCGaGG-GCGGCgGCgGAGGGCGCCGg- -3'
miRNA:   3'- -GCgCCgCGCUG-CGgCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3438 0.68 0.476752
Target:  5'- aCGCGGCGCcagcCGCCGcGGGgGUCGg- -3'
miRNA:   3'- -GCGCCGCGcu--GCGGCuCCUgCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3479 0.66 0.635601
Target:  5'- uCGCGccgucaGCGCGGCggGCCGcGGGCGCgGg- -3'
miRNA:   3'- -GCGC------CGCGCUG--CGGCuCCUGCGgCac -5'
21558 5' -63.5 NC_004812.1 + 3535 0.7 0.398353
Target:  5'- gCGgGGcCGCGGCGCCG-GGccggcucuucuugcGCGCCGg- -3'
miRNA:   3'- -GCgCC-GCGCUGCGGCuCC--------------UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3581 0.7 0.384936
Target:  5'- gGCGGCgGCGGCGgCGggcGGGcGCGCCGg- -3'
miRNA:   3'- gCGCCG-CGCUGCgGC---UCC-UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3710 0.71 0.325932
Target:  5'- gGCGGCgGCGGCGCCGGcGGAgCGCaCcUGg -3'
miRNA:   3'- gCGCCG-CGCUGCGGCU-CCU-GCG-GcAC- -5'
21558 5' -63.5 NC_004812.1 + 3759 0.68 0.476752
Target:  5'- aGCGGCGCGgcgGCGCCGGcGACgagGCUGa- -3'
miRNA:   3'- gCGCCGCGC---UGCGGCUcCUG---CGGCac -5'
21558 5' -63.5 NC_004812.1 + 3800 0.67 0.549829
Target:  5'- gGCGGCGaCGGCgGCCucGG-CGCCGc- -3'
miRNA:   3'- gCGCCGC-GCUG-CGGcuCCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3912 0.77 0.139408
Target:  5'- gGCGGCGCGGCGgCGGGGcCGCgCGg- -3'
miRNA:   3'- gCGCCGCGCUGCgGCUCCuGCG-GCac -5'
21558 5' -63.5 NC_004812.1 + 4042 0.69 0.433593
Target:  5'- gGCGGCgGCGGCgGCCGcGG-CGUCGUc -3'
miRNA:   3'- gCGCCG-CGCUG-CGGCuCCuGCGGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.