miRNA display CGI


Results 41 - 60 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 3' -58.7 NC_004812.1 + 102986 0.68 0.695926
Target:  5'- ---gCUUCuCCUCgUCCgCCCUCUCCa- -3'
miRNA:   3'- gaaaGAAG-GGAGgAGG-GGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 34101 0.68 0.695926
Target:  5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3'
miRNA:   3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 3200 0.68 0.695926
Target:  5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3'
miRNA:   3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 104336 0.68 0.685996
Target:  5'- -cUUCUccgCCCaUCC-CCCgCCUCCCCg- -3'
miRNA:   3'- gaAAGAa--GGG-AGGaGGG-GGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 118161 0.68 0.676023
Target:  5'- --gUCUcCCCgCgCUCCCCCgUCCCCg- -3'
miRNA:   3'- gaaAGAaGGGaG-GAGGGGG-AGGGGag -5'
21559 3' -58.7 NC_004812.1 + 54339 0.68 0.676023
Target:  5'- ---cCUaCCCaucCCUCCCCC-CUCCUCg -3'
miRNA:   3'- gaaaGAaGGGa--GGAGGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 149062 0.68 0.676023
Target:  5'- --gUCUcCCCgCgCUCCCCCgUCCCCg- -3'
miRNA:   3'- gaaAGAaGGGaG-GAGGGGG-AGGGGag -5'
21559 3' -58.7 NC_004812.1 + 140540 0.68 0.666015
Target:  5'- gUUUCcUCCCguggaCUUCgCCCUCCCCg- -3'
miRNA:   3'- gAAAGaAGGGa----GGAGgGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 140037 0.68 0.666015
Target:  5'- uUUUCUuaaaaaUCgCCUCCcacagcUCCUCCUCCCCg- -3'
miRNA:   3'- gAAAGA------AG-GGAGG------AGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 147979 0.68 0.655981
Target:  5'- ------gCCCg-CUCCCCCgCCCCUCg -3'
miRNA:   3'- gaaagaaGGGagGAGGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 35026 0.68 0.655981
Target:  5'- --aUCcUCCCUCggCCCCCgCCCCg- -3'
miRNA:   3'- gaaAGaAGGGAGgaGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 4125 0.68 0.655981
Target:  5'- --aUCcUCCCUCggCCCCCgCCCCg- -3'
miRNA:   3'- gaaAGaAGGGAGgaGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 117078 0.68 0.655981
Target:  5'- ------gCCCg-CUCCCCCgCCCCUCg -3'
miRNA:   3'- gaaagaaGGGagGAGGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 146944 0.68 0.655981
Target:  5'- -----gUUCCgggCCgUCCCCCUCCCCg- -3'
miRNA:   3'- gaaagaAGGGa--GG-AGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 150465 0.69 0.645928
Target:  5'- ------gCCC-CCgacCCCCUUCCCCUCg -3'
miRNA:   3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 118998 0.69 0.645928
Target:  5'- uCUUUCcuUUCuCCUUCUCUCCC-CCCCa- -3'
miRNA:   3'- -GAAAG--AAG-GGAGGAGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 149899 0.69 0.645928
Target:  5'- uCUUUCcuUUCuCCUUCUCUCCC-CCCCa- -3'
miRNA:   3'- -GAAAG--AAG-GGAGGAGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 119564 0.69 0.645928
Target:  5'- ------gCCC-CCgacCCCCUUCCCCUCg -3'
miRNA:   3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 118738 0.69 0.635864
Target:  5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3'
miRNA:   3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 149639 0.69 0.635864
Target:  5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3'
miRNA:   3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.