miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 3' -58.7 NC_004812.1 + 154641 0.75 0.321373
Target:  5'- ------cCCCUCC-CCCCCUCCCCcCg -3'
miRNA:   3'- gaaagaaGGGAGGaGGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 154556 0.67 0.744628
Target:  5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3'
miRNA:   3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 153496 0.78 0.196058
Target:  5'- ------aCCCUCCccaccacucccUCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGAGG-----------AGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 151828 0.66 0.79095
Target:  5'- ------gCCCUCgCcccgCCCCCUCCCC-Ca -3'
miRNA:   3'- gaaagaaGGGAG-Ga---GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 151379 0.7 0.555857
Target:  5'- uCUUgugCUUCUC-CCgggagCCCCCgCCCCUCu -3'
miRNA:   3'- -GAAa--GAAGGGaGGa----GGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 151326 0.73 0.424958
Target:  5'- -cUUCUccUCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaAAGA--AGGGa--GGAGGGGGaGgGGAG- -5'
21559 3' -58.7 NC_004812.1 + 151270 0.69 0.605686
Target:  5'- --cUC-UCCCgggCCUCCCCC-CgCCUCc -3'
miRNA:   3'- gaaAGaAGGGa--GGAGGGGGaGgGGAG- -5'
21559 3' -58.7 NC_004812.1 + 150594 0.72 0.451545
Target:  5'- --gUCgcugCCCgCgUCCCCCuUCCCCUCg -3'
miRNA:   3'- gaaAGaa--GGGaGgAGGGGG-AGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 150551 0.75 0.314234
Target:  5'- ---cCUUCgCCUCCgCCgCCUUCCCCUCg -3'
miRNA:   3'- gaaaGAAG-GGAGGaGG-GGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 150522 0.74 0.358872
Target:  5'- ----gUUCCCgCCgacCCCCUUCCCCUCg -3'
miRNA:   3'- gaaagAAGGGaGGa--GGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 150504 0.91 0.029172
Target:  5'- uCUUUCUUUCCUuucucuccCCUCCCCCUCCCCUCc -3'
miRNA:   3'- -GAAAGAAGGGA--------GGAGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 150485 0.74 0.336012
Target:  5'- ------cCCCcCCUCCCCCUCCCCc- -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 150465 0.69 0.645928
Target:  5'- ------gCCC-CCgacCCCCUUCCCCUCg -3'
miRNA:   3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 149970 0.78 0.221375
Target:  5'- --aUC-UCCC-CCaCCCCCUCCCCUCu -3'
miRNA:   3'- gaaAGaAGGGaGGaGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 149899 0.69 0.645928
Target:  5'- uCUUUCcuUUCuCCUUCUCUCCC-CCCCa- -3'
miRNA:   3'- -GAAAG--AAG-GGAGGAGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 149672 0.67 0.715623
Target:  5'- --cUUUUCCCcgCUUCCCCCccaCCCCg- -3'
miRNA:   3'- gaaAGAAGGGa-GGAGGGGGa--GGGGag -5'
21559 3' -58.7 NC_004812.1 + 149639 0.69 0.635864
Target:  5'- cCUUUCccCCC-CC-CCCCC-CCCCUUg -3'
miRNA:   3'- -GAAAGaaGGGaGGaGGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 149372 0.73 0.391005
Target:  5'- -cUUUUUCCCcuUCCUCCCCCaaacCCCCa- -3'
miRNA:   3'- gaAAGAAGGG--AGGAGGGGGa---GGGGag -5'
21559 3' -58.7 NC_004812.1 + 149161 0.71 0.516867
Target:  5'- gUUUCcccccgCCCUUCUCUCCCagaCCCCUCc -3'
miRNA:   3'- gAAAGaa----GGGAGGAGGGGGa--GGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 149109 0.67 0.725372
Target:  5'- cCUUUCgcuccggCCCaccgUCCcCCCCCcaucCCCCUCg -3'
miRNA:   3'- -GAAAGaa-----GGG----AGGaGGGGGa---GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.