miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 72030 0.66 0.774794
Target:  5'- cGGuGGGUcgcagGaGGcGGuGGAGGGGGggGc -3'
miRNA:   3'- aCC-CCCAaa---C-CC-CCuCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 34 0.66 0.774794
Target:  5'- cGGGGGgc-GGGGGuucguucGGggGGGc--- -3'
miRNA:   3'- aCCCCCaaaCCCCCu------CCuuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 27104 0.66 0.774794
Target:  5'- cGGGGcccUUGGGcGGAGGcuGcGGGAGg -3'
miRNA:   3'- aCCCCca-AACCC-CCUCCuuC-CCCUUu -5'
21559 5' -59.1 NC_004812.1 + 135689 0.66 0.774794
Target:  5'- aGGGGGUgguugugUGccGuGGGGAAGGGGGu- -3'
miRNA:   3'- aCCCCCAa------ACccC-CUCCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 156444 0.66 0.774794
Target:  5'- cGGGGGgc-GGGGGuucguucGGggGGGc--- -3'
miRNA:   3'- aCCCCCaaaCCCCCu------CCuuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 156168 0.66 0.774794
Target:  5'- cGcGGGaccGGGGccgcgcGAGGAAGGGGAGGg -3'
miRNA:   3'- aCcCCCaaaCCCC------CUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 125543 0.66 0.774794
Target:  5'- cGGGGGgc-GGGGGuucguucGGggGGGc--- -3'
miRNA:   3'- aCCCCCaaaCCCCCu------CCuuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 30660 0.66 0.774794
Target:  5'- cGcGGGaccGGGGccgcgcGAGGAAGGGGAGGg -3'
miRNA:   3'- aCcCCCaaaCCCC------CUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 91083 0.66 0.765482
Target:  5'- cGGGGGcgaGGGGGGGcgccAGGGGc-- -3'
miRNA:   3'- aCCCCCaaaCCCCCUCcu--UCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 123296 0.66 0.765482
Target:  5'- aGGGGGgc--GGGGGGGAcGGGu--- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 154197 0.66 0.765482
Target:  5'- aGGGGGgc--GGGGGGGAcGGGu--- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 121753 0.66 0.765482
Target:  5'- cGGGGGgcgccgGGccuccGGGAGGcGGGGGc-- -3'
miRNA:   3'- aCCCCCaaa---CC-----CCCUCCuUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 64094 0.66 0.762665
Target:  5'- cGGGGGcgaagaGGcGGGAGacgccgcggcagacGggGGGGAGGa -3'
miRNA:   3'- aCCCCCaaa---CC-CCCUC--------------CuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 91164 0.66 0.750344
Target:  5'- cGGGGGccgGGGGGAccccuccccgagGGAcgcgggcucgggggcGGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCCCCCU------------CCU---------------UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 24232 0.66 0.746517
Target:  5'- aGGGGc----GGGGAaacagugcgGGAAGGGGAAGg -3'
miRNA:   3'- aCCCCcaaacCCCCU---------CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 10705 0.66 0.746517
Target:  5'- cGGGGGcgUccacgggcuccaGGGGGAGGGgcGGcGGGGc- -3'
miRNA:   3'- aCCCCCaaA------------CCCCCUCCU--UC-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 149740 0.66 0.746517
Target:  5'- aGGGGc----GGGGAaacagugcgGGAAGGGGAAGg -3'
miRNA:   3'- aCCCCcaaacCCCCU---------CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 81678 0.66 0.736883
Target:  5'- gGGGGGUggacgGGGGGcagcuGGGccacGGGGcGGAGc -3'
miRNA:   3'- aCCCCCAaa---CCCCCu----CCU----UCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 70917 0.66 0.736883
Target:  5'- cGGGGGggcGGGaGGuGGGAucugccgucGGGGGAc- -3'
miRNA:   3'- aCCCCCaaaCCC-CC-UCCU---------UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 46515 0.66 0.736883
Target:  5'- cGGGGGUcgucUGGGGGAGc-AGGGc--- -3'
miRNA:   3'- aCCCCCAa---ACCCCCUCcuUCCCcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.