Results 21 - 40 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 37868 | 0.81 | 0.108565 |
Target: 5'- gUGGGcaaGGg--GGGGGGGGggGGGGAAAg -3' miRNA: 3'- -ACCC---CCaaaCCCCCUCCuuCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 40622 | 0.81 | 0.108565 |
Target: 5'- aGGGGGgcgcGGGGGAgGGGAGGGGGGc -3' miRNA: 3'- aCCCCCaaa-CCCCCU-CCUUCCCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 40662 | 0.81 | 0.108565 |
Target: 5'- aGGGGGgcgcGGGGGAgGGGAGGGGGGc -3' miRNA: 3'- aCCCCCaaa-CCCCCU-CCUUCCCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24306 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150165 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24345 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 149814 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150360 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 149853 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 149892 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 149931 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 149970 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150009 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150048 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150087 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150126 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150204 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150243 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150282 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150321 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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