miRNA display CGI


Results 21 - 40 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 122461 0.66 0.722743
Target:  5'- cGGGgGCGCGGGCgccccuggcgGGCgCCGgGUGGa- -3'
miRNA:   3'- -CCCaUGCGCUCG----------UCGaGGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 121771 0.66 0.713149
Target:  5'- cGGGagGCGgGGGCAGCgagggCCGCuuGGg- -3'
miRNA:   3'- -CCCa-UGCgCUCGUCGa----GGCGcgCCag -5'
21567 3' -60.4 NC_004812.1 + 129251 0.66 0.713149
Target:  5'- cGGGccGCGCGccAGCAGCg--GCGCGG-Cg -3'
miRNA:   3'- -CCCa-UGCGC--UCGUCGaggCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 142418 0.66 0.741704
Target:  5'- uGGcGCgGCGAcGCAGUugUCCGCGCG-UCg -3'
miRNA:   3'- cCCaUG-CGCU-CGUCG--AGGCGCGCcAG- -5'
21567 3' -60.4 NC_004812.1 + 18275 0.66 0.751055
Target:  5'- -cGUGCGCGAuccGCAGggccucCUCCGCGcCGG-Cg -3'
miRNA:   3'- ccCAUGCGCU---CGUC------GAGGCGC-GCCaG- -5'
21567 3' -60.4 NC_004812.1 + 148305 0.66 0.732264
Target:  5'- cGGcGUACGCGcGgAGCUCCcgGCGCaGaUCg -3'
miRNA:   3'- -CC-CAUGCGCuCgUCGAGG--CGCGcC-AG- -5'
21567 3' -60.4 NC_004812.1 + 145632 0.66 0.721787
Target:  5'- gGGGcGCGCcAGCacGGCcaccucaucaccuUCCGCGCGGa- -3'
miRNA:   3'- -CCCaUGCGcUCG--UCG-------------AGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 117260 0.66 0.722743
Target:  5'- cGGGccCGcCGAGC-GCUCCG-GCGGg- -3'
miRNA:   3'- -CCCauGC-GCUCGuCGAGGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 61280 0.66 0.712186
Target:  5'- gGGGUGCuGUggaaccgcccguuGGGCGGC-CUcCGCGGUCg -3'
miRNA:   3'- -CCCAUG-CG-------------CUCGUCGaGGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 5818 0.66 0.751055
Target:  5'- cGGG-GCGCG-GCgGGCUCUGCG-GGcCg -3'
miRNA:   3'- -CCCaUGCGCuCG-UCGAGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 79103 0.66 0.722743
Target:  5'- ---aACGgGguAGCGGCgugCCGCGCGGaUCg -3'
miRNA:   3'- cccaUGCgC--UCGUCGa--GGCGCGCC-AG- -5'
21567 3' -60.4 NC_004812.1 + 3256 0.66 0.760309
Target:  5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3'
miRNA:   3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 154965 0.66 0.741704
Target:  5'- aGGGgggaCGGGCGGg-CCGCGCGGg- -3'
miRNA:   3'- -CCCaugcGCUCGUCgaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 155680 0.66 0.732264
Target:  5'- cGGGaGCGCcGGCgGGCUCgGCGCGcG-Cg -3'
miRNA:   3'- -CCCaUGCGcUCG-UCGAGgCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 105204 0.66 0.759388
Target:  5'- cGGGgcgcggGCGCGGGCcccgGGCUcuucgaaggacacCCGgGCGGg- -3'
miRNA:   3'- -CCCa-----UGCGCUCG----UCGA-------------GGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 79439 0.66 0.732264
Target:  5'- gGGGUuuG-GGGUGGCgccuUCCGCGCGG-Cg -3'
miRNA:   3'- -CCCAugCgCUCGUCG----AGGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 73122 0.66 0.713149
Target:  5'- cGGUcACGCGGGCcgcgggauccGGCgcgCCGCcGCGGa- -3'
miRNA:   3'- cCCA-UGCGCUCG----------UCGa--GGCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 100141 0.66 0.741704
Target:  5'- uGGcgGCGCGGGCGGCgggGCGgGGcUCa -3'
miRNA:   3'- cCCa-UGCGCUCGUCGaggCGCgCC-AG- -5'
21567 3' -60.4 NC_004812.1 + 35909 0.66 0.760309
Target:  5'- gGGGUccuCGaCGAGCucgcGCUCCcGgGCGGcCg -3'
miRNA:   3'- -CCCAu--GC-GCUCGu---CGAGG-CgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 107417 0.66 0.754769
Target:  5'- cGGGUGCGgccaggcccaccggcCGcGCGGCggCCGuCGCGGa- -3'
miRNA:   3'- -CCCAUGC---------------GCuCGUCGa-GGC-GCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.