miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 122461 0.66 0.722743
Target:  5'- cGGGgGCGCGGGCgccccuggcgGGCgCCGgGUGGa- -3'
miRNA:   3'- -CCCaUGCGCUCG----------UCGaGGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 28202 0.66 0.713149
Target:  5'- cGGUGCGCGAucagaaagucGCGucGCUCCGCuugcuccuccacGCGGa- -3'
miRNA:   3'- cCCAUGCGCU----------CGU--CGAGGCG------------CGCCag -5'
21567 3' -60.4 NC_004812.1 + 122310 0.66 0.722743
Target:  5'- cGGGgggAgGCGGGCGGCgagucgCCuaucacgauggGCGCGGg- -3'
miRNA:   3'- -CCCa--UgCGCUCGUCGa-----GG-----------CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 129251 0.66 0.713149
Target:  5'- cGGGccGCGCGccAGCAGCg--GCGCGG-Cg -3'
miRNA:   3'- -CCCa-UGCGC--UCGUCGaggCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 79103 0.66 0.722743
Target:  5'- ---aACGgGguAGCGGCgugCCGCGCGGaUCg -3'
miRNA:   3'- cccaUGCgC--UCGUCGa--GGCGCGCC-AG- -5'
21567 3' -60.4 NC_004812.1 + 3256 0.66 0.760309
Target:  5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3'
miRNA:   3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 79439 0.66 0.732264
Target:  5'- gGGGUuuG-GGGUGGCgccuUCCGCGCGG-Cg -3'
miRNA:   3'- -CCCAugCgCUCGUCG----AGGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 117260 0.66 0.722743
Target:  5'- cGGGccCGcCGAGC-GCUCCG-GCGGg- -3'
miRNA:   3'- -CCCauGC-GCUCGuCGAGGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 121771 0.66 0.713149
Target:  5'- cGGGagGCGgGGGCAGCgagggCCGCuuGGg- -3'
miRNA:   3'- -CCCa-UGCgCUCGUCGa----GGCGcgCCag -5'
21567 3' -60.4 NC_004812.1 + 73122 0.66 0.713149
Target:  5'- cGGUcACGCGGGCcgcgggauccGGCgcgCCGCcGCGGa- -3'
miRNA:   3'- cCCA-UGCGCUCG----------UCGa--GGCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 123819 0.66 0.732264
Target:  5'- gGGGUGcCGCGGGCggGGC-CCGgGCGc-- -3'
miRNA:   3'- -CCCAU-GCGCUCG--UCGaGGCgCGCcag -5'
21567 3' -60.4 NC_004812.1 + 130258 0.66 0.713149
Target:  5'- cGGGg--GCG-GCGGCUCgGCGcCGGg- -3'
miRNA:   3'- -CCCaugCGCuCGUCGAGgCGC-GCCag -5'
21567 3' -60.4 NC_004812.1 + 123638 0.66 0.732264
Target:  5'- aGG-ACGCG-GCGGCggUCCGgacgGCGGUCc -3'
miRNA:   3'- cCCaUGCGCuCGUCG--AGGCg---CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 154746 0.66 0.722743
Target:  5'- gGGGU-CGCgGAGgAGCgggccggggCUGCGCGGg- -3'
miRNA:   3'- -CCCAuGCG-CUCgUCGa--------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 19136 0.66 0.713149
Target:  5'- ---gGCGUGGGCGGCcagcgCCGCGgGGg- -3'
miRNA:   3'- cccaUGCGCUCGUCGa----GGCGCgCCag -5'
21567 3' -60.4 NC_004812.1 + 90937 0.66 0.732264
Target:  5'- cGGGccUugGCGGGC-GCUcucCCGCGgGGcUCc -3'
miRNA:   3'- -CCC--AugCGCUCGuCGA---GGCGCgCC-AG- -5'
21567 3' -60.4 NC_004812.1 + 148305 0.66 0.732264
Target:  5'- cGGcGUACGCGcGgAGCUCCcgGCGCaGaUCg -3'
miRNA:   3'- -CC-CAUGCGCuCgUCGAGG--CGCGcC-AG- -5'
21567 3' -60.4 NC_004812.1 + 145632 0.66 0.721787
Target:  5'- gGGGcGCGCcAGCacGGCcaccucaucaccuUCCGCGCGGa- -3'
miRNA:   3'- -CCCaUGCGcUCG--UCG-------------AGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 152736 0.66 0.732264
Target:  5'- uGGcUGCGCGAGCuGCgccgCaCGCGCGa-- -3'
miRNA:   3'- cCC-AUGCGCUCGuCGa---G-GCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 155240 0.66 0.713149
Target:  5'- uGGUGCGCGAG-GGCgggCCgaggggggGCGCGG-Cg -3'
miRNA:   3'- cCCAUGCGCUCgUCGa--GG--------CGCGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.