miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 53 0.68 0.634759
Target:  5'- cGGGgggGCGCGuuugGGCgGGCUCCcGgGCGGg- -3'
miRNA:   3'- -CCCa--UGCGC----UCG-UCGAGG-CgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 581 0.67 0.693777
Target:  5'- uGGagcCGCGGGCgcGGCUCCgguaGCGCGGa- -3'
miRNA:   3'- cCCau-GCGCUCG--UCGAGG----CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 699 0.67 0.664378
Target:  5'- cGGGUcCG-GAGCuccgucggcgucGGCgCCgGCGCGGUCg -3'
miRNA:   3'- -CCCAuGCgCUCG------------UCGaGG-CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 1315 0.75 0.253644
Target:  5'- cGGUcCGCGGGCGG-UCCGCggGCGGUCc -3'
miRNA:   3'- cCCAuGCGCUCGUCgAGGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 2363 0.67 0.693777
Target:  5'- cGGGcccgGCGCGcGCGGCgu--CGCGGUCc -3'
miRNA:   3'- -CCCa---UGCGCuCGUCGaggcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 2533 0.71 0.453615
Target:  5'- ---aGCGCGGGCAGCaCgGCGCGG-Cg -3'
miRNA:   3'- cccaUGCGCUCGUCGaGgCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 2733 0.67 0.684014
Target:  5'- ---gGCGCGGcGCAGgUCgCGCGCGG-Cg -3'
miRNA:   3'- cccaUGCGCU-CGUCgAG-GCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 3256 0.66 0.760309
Target:  5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3'
miRNA:   3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 3743 0.66 0.713149
Target:  5'- cGGGccGCGCGccAGCAGCg--GCGCGG-Cg -3'
miRNA:   3'- -CCCa-UGCGC--UCGUCGaggCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 3905 0.74 0.297498
Target:  5'- cGGGcgcggcgGCGCG-GCGGCggggCCGCGCGG-Cg -3'
miRNA:   3'- -CCCa------UGCGCuCGUCGa---GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 4750 0.66 0.713149
Target:  5'- cGGGg--GCG-GCGGCUCgGCGcCGGg- -3'
miRNA:   3'- -CCCaugCGCuCGUCGAGgCGC-GCCag -5'
21567 3' -60.4 NC_004812.1 + 4904 0.69 0.575652
Target:  5'- cGGUGCGUGuGCgccAGCgaauaaacCCGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCuCG---UCGa-------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 5818 0.66 0.751055
Target:  5'- cGGG-GCGCG-GCgGGCUCUGCG-GGcCg -3'
miRNA:   3'- -CCCaUGCGCuCG-UCGAGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 5883 0.68 0.605122
Target:  5'- cGGGggGCGCGGGCgcgggcucaggGGCcgCCGgGCGG-Ca -3'
miRNA:   3'- -CCCa-UGCGCUCG-----------UCGa-GGCgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 5939 0.67 0.693777
Target:  5'- cGGaGCGCGggggcgaccGGCGGCUCCGCcCcGUCg -3'
miRNA:   3'- cCCaUGCGC---------UCGUCGAGGCGcGcCAG- -5'
21567 3' -60.4 NC_004812.1 + 6021 0.74 0.318021
Target:  5'- aGGGggACGCGGGCAGCgaCUGCGCGc-- -3'
miRNA:   3'- -CCCa-UGCGCUCGUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 6316 0.67 0.693777
Target:  5'- cGGGcACGCGGGgGGCcCCGgGCaGGa- -3'
miRNA:   3'- -CCCaUGCGCUCgUCGaGGCgCG-CCag -5'
21567 3' -60.4 NC_004812.1 + 6377 0.77 0.195614
Target:  5'- aGGG-ACGCGGGCAGCguUCCG-GgGGUCa -3'
miRNA:   3'- -CCCaUGCGCUCGUCG--AGGCgCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 6830 0.72 0.402151
Target:  5'- uGGGUGgG-GGGCGGCggcCCuCGCGGUCg -3'
miRNA:   3'- -CCCAUgCgCUCGUCGa--GGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 7470 0.69 0.565896
Target:  5'- cGGGgaccGCGCGcccCGGCggCCGCGCGGa- -3'
miRNA:   3'- -CCCa---UGCGCuc-GUCGa-GGCGCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.