miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 11156 1.12 0.000813
Target:  5'- cGGGUACGCGAGCAGCUCCGCGCGGUCa -3'
miRNA:   3'- -CCCAUGCGCUCGUCGAGGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 43668 0.83 0.079393
Target:  5'- cGGGaaggACGaCGAGCGGCUCCGCGUugugGGUCg -3'
miRNA:   3'- -CCCa---UGC-GCUCGUCGAGGCGCG----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 81856 0.81 0.102577
Target:  5'- cGGGgccgcGCGCGAGCAGCUgCGCGCGcUCc -3'
miRNA:   3'- -CCCa----UGCGCUCGUCGAgGCGCGCcAG- -5'
21567 3' -60.4 NC_004812.1 + 83515 0.81 0.110415
Target:  5'- cGGUGCGCGAGCAGgcccgguaaguuCUCCgcgaggaGCGCGGUCu -3'
miRNA:   3'- cCCAUGCGCUCGUC------------GAGG-------CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 64151 0.79 0.153272
Target:  5'- cGGGgacggcgGCGCG-GCgGGCUCCGCGCGGg- -3'
miRNA:   3'- -CCCa------UGCGCuCG-UCGAGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 48739 0.78 0.161016
Target:  5'- uGGUGCGCGuGGCGGCUCCGCccucggagGCGGa- -3'
miRNA:   3'- cCCAUGCGC-UCGUCGAGGCG--------CGCCag -5'
21567 3' -60.4 NC_004812.1 + 6377 0.77 0.195614
Target:  5'- aGGG-ACGCGGGCAGCguUCCG-GgGGUCa -3'
miRNA:   3'- -CCCaUGCGCUCGUCG--AGGCgCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 37278 0.77 0.195614
Target:  5'- aGGG-ACGCGGGCAGCguUCCG-GgGGUCa -3'
miRNA:   3'- -CCCaUGCGCUCGUCG--AGGCgCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 43864 0.76 0.225677
Target:  5'- cGG-GCGCG-GCGGCgccgCCGCGCGGUUc -3'
miRNA:   3'- cCCaUGCGCuCGUCGa---GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 16705 0.76 0.236537
Target:  5'- cGGGUGCGCGAGCGa--CCGCGgGGcCg -3'
miRNA:   3'- -CCCAUGCGCUCGUcgaGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 146407 0.76 0.236537
Target:  5'- -cGUGCGCGGcCAGCUCCGCGuCGGg- -3'
miRNA:   3'- ccCAUGCGCUcGUCGAGGCGC-GCCag -5'
21567 3' -60.4 NC_004812.1 + 67785 0.75 0.253644
Target:  5'- cGGG-GCGCGGGCGGCUUCGgGgGGg- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGAGGCgCgCCag -5'
21567 3' -60.4 NC_004812.1 + 1315 0.75 0.253644
Target:  5'- cGGUcCGCGGGCGG-UCCGCggGCGGUCc -3'
miRNA:   3'- cCCAuGCGCUCGUCgAGGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 32216 0.75 0.253644
Target:  5'- cGGUcCGCGGGCGG-UCCGCggGCGGUCc -3'
miRNA:   3'- cCCAuGCGCUCGUCgAGGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 36169 0.75 0.259568
Target:  5'- gGGGUGCGCGGGgucGCUCUGggaGUGGUCg -3'
miRNA:   3'- -CCCAUGCGCUCgu-CGAGGCg--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 139128 0.75 0.265604
Target:  5'- cGGGaGCGCcaccGCGGCaUCCGcCGCGGUCg -3'
miRNA:   3'- -CCCaUGCGcu--CGUCG-AGGC-GCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 46269 0.75 0.265604
Target:  5'- cGGG-GCGCG-GCAGgaUCCGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCuCGUCg-AGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 153126 0.75 0.284396
Target:  5'- gGGGgcggGCGCGGGgGGCUCgGCgGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCgUCGAGgCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 122225 0.75 0.284396
Target:  5'- gGGGgcggGCGCGGGgGGCUCgGCgGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCgUCGAGgCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 129413 0.74 0.297498
Target:  5'- cGGGcgcggcgGCGCG-GCGGCggggCCGCGCGG-Cg -3'
miRNA:   3'- -CCCa------UGCGCuCGUCGa---GGCGCGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.