miRNA display CGI


Results 1 - 20 of 310 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 6830 0.72 0.402151
Target:  5'- uGGGUGgG-GGGCGGCggcCCuCGCGGUCg -3'
miRNA:   3'- -CCCAUgCgCUCGUCGa--GGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 129413 0.74 0.297498
Target:  5'- cGGGcgcggcgGCGCG-GCGGCggggCCGCGCGG-Cg -3'
miRNA:   3'- -CCCa------UGCGCuCGUCGa---GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 6021 0.74 0.318021
Target:  5'- aGGGggACGCGGGCAGCgaCUGCGCGc-- -3'
miRNA:   3'- -CCCa-UGCGCUCGUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 76284 0.73 0.332285
Target:  5'- cGGcGCGCGcggccgccuccAGCAGCgCgGCGCGGUCg -3'
miRNA:   3'- cCCaUGCGC-----------UCGUCGaGgCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 95054 0.73 0.347013
Target:  5'- gGGGUcccgGCGCGAGCGGCUacgcgaCCGcCGCcGUCc -3'
miRNA:   3'- -CCCA----UGCGCUCGUCGA------GGC-GCGcCAG- -5'
21567 3' -60.4 NC_004812.1 + 118639 0.73 0.362202
Target:  5'- aGGGagaggGCGCcugGAGCGGC-CCugGCGCGGUCc -3'
miRNA:   3'- -CCCa----UGCG---CUCGUCGaGG--CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 89399 0.72 0.385837
Target:  5'- aGGGagccCGCGGGC-GCcgCCGcCGCGGUCa -3'
miRNA:   3'- -CCCau--GCGCUCGuCGa-GGC-GCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 102751 0.72 0.389065
Target:  5'- aGGG-ACGCGuaggcGGCGGCgucgucgagcccccCCGCGUGGUCu -3'
miRNA:   3'- -CCCaUGCGC-----UCGUCGa-------------GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 117624 0.72 0.393939
Target:  5'- gGGGgcgGCGCGGGCcgccgGGCgCgGCGgGGUCg -3'
miRNA:   3'- -CCCa--UGCGCUCG-----UCGaGgCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 122225 0.75 0.284396
Target:  5'- gGGGgcggGCGCGGGgGGCUCgGCgGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCgUCGAGgCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 139128 0.75 0.265604
Target:  5'- cGGGaGCGCcaccGCGGCaUCCGcCGCGGUCg -3'
miRNA:   3'- -CCCaUGCGcu--CGUCG-AGGC-GCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 46269 0.75 0.265604
Target:  5'- cGGG-GCGCG-GCAGgaUCCGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCuCGUCg-AGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 43668 0.83 0.079393
Target:  5'- cGGGaaggACGaCGAGCGGCUCCGCGUugugGGUCg -3'
miRNA:   3'- -CCCa---UGC-GCUCGUCGAGGCGCG----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 83515 0.81 0.110415
Target:  5'- cGGUGCGCGAGCAGgcccgguaaguuCUCCgcgaggaGCGCGGUCu -3'
miRNA:   3'- cCCAUGCGCUCGUC------------GAGG-------CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 64151 0.79 0.153272
Target:  5'- cGGGgacggcgGCGCG-GCgGGCUCCGCGCGGg- -3'
miRNA:   3'- -CCCa------UGCGCuCG-UCGAGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 6377 0.77 0.195614
Target:  5'- aGGG-ACGCGGGCAGCguUCCG-GgGGUCa -3'
miRNA:   3'- -CCCaUGCGCUCGUCG--AGGCgCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 16705 0.76 0.236537
Target:  5'- cGGGUGCGCGAGCGa--CCGCGgGGcCg -3'
miRNA:   3'- -CCCAUGCGCUCGUcgaGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 67785 0.75 0.253644
Target:  5'- cGGG-GCGCGGGCGGCUUCGgGgGGg- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGAGGCgCgCCag -5'
21567 3' -60.4 NC_004812.1 + 1315 0.75 0.253644
Target:  5'- cGGUcCGCGGGCGG-UCCGCggGCGGUCc -3'
miRNA:   3'- cCCAuGCGCUCGUCgAGGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 36169 0.75 0.259568
Target:  5'- gGGGUGCGCGGGgucGCUCUGggaGUGGUCg -3'
miRNA:   3'- -CCCAUGCGCUCgu-CGAGGCg--CGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.