Results 41 - 60 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21567 | 3' | -60.4 | NC_004812.1 | + | 11685 | 0.66 | 0.732264 |
Target: 5'- cGGcACuCGGGCAGCUgCGgGUGGUa -3' miRNA: 3'- cCCaUGcGCUCGUCGAgGCgCGCCAg -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 59292 | 0.66 | 0.732264 |
Target: 5'- aGGuUGCGCaucAGCuGCUCCaccuCGCGGUCc -3' miRNA: 3'- cCC-AUGCGc--UCGuCGAGGc---GCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 123638 | 0.66 | 0.732264 |
Target: 5'- aGG-ACGCG-GCGGCggUCCGgacgGCGGUCc -3' miRNA: 3'- cCCaUGCGCuCGUCG--AGGCg---CGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 148305 | 0.66 | 0.732264 |
Target: 5'- cGGcGUACGCGcGgAGCUCCcgGCGCaGaUCg -3' miRNA: 3'- -CC-CAUGCGCuCgUCGAGG--CGCGcC-AG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 79439 | 0.66 | 0.732264 |
Target: 5'- gGGGUuuG-GGGUGGCgccuUCCGCGCGG-Cg -3' miRNA: 3'- -CCCAugCgCUCGUCG----AGGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 90937 | 0.66 | 0.732264 |
Target: 5'- cGGGccUugGCGGGC-GCUcucCCGCGgGGcUCc -3' miRNA: 3'- -CCC--AugCGCUCGuCGA---GGCGCgCC-AG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 123819 | 0.66 | 0.732264 |
Target: 5'- gGGGUGcCGCGGGCggGGC-CCGgGCGc-- -3' miRNA: 3'- -CCCAU-GCGCUCG--UCGaGGCgCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 145959 | 0.66 | 0.732264 |
Target: 5'- uGGGUGCGgggcacccuCGGGCugggggccguGCUgUGCGgGGUCg -3' miRNA: 3'- -CCCAUGC---------GCUCGu---------CGAgGCGCgCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 155680 | 0.66 | 0.732264 |
Target: 5'- cGGGaGCGCcGGCgGGCUCgGCGCGcG-Cg -3' miRNA: 3'- -CCCaUGCGcUCG-UCGAGgCGCGC-CaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 125117 | 0.66 | 0.732264 |
Target: 5'- cGGGUccGCGCuaccgGAGCcgcgcccgcGGCUCCaCGCGGcCg -3' miRNA: 3'- -CCCA--UGCG-----CUCG---------UCGAGGcGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 43702 | 0.66 | 0.732264 |
Target: 5'- cGGGccgGCGCaggucuGGGCGGCUUcgggaacgaaCGCGCGGa- -3' miRNA: 3'- -CCCa--UGCG------CUCGUCGAG----------GCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 31915 | 0.66 | 0.722743 |
Target: 5'- gGGGUcgcccccauugACGUcAGCGGCUacaaCCcCGCGGUCu -3' miRNA: 3'- -CCCA-----------UGCGcUCGUCGA----GGcGCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 153211 | 0.66 | 0.722743 |
Target: 5'- cGGGgggAgGCGGGCGGCgagucgCCuaucacgauggGCGCGGg- -3' miRNA: 3'- -CCCa--UgCGCUCGUCGa-----GG-----------CGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 148161 | 0.66 | 0.722743 |
Target: 5'- cGGGccCGcCGAGC-GCUCCG-GCGGg- -3' miRNA: 3'- -CCCauGC-GCUCGuCGAGGCgCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 122310 | 0.66 | 0.722743 |
Target: 5'- cGGGgggAgGCGGGCGGCgagucgCCuaucacgauggGCGCGGg- -3' miRNA: 3'- -CCCa--UgCGCUCGUCGa-----GG-----------CGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 153362 | 0.66 | 0.722743 |
Target: 5'- cGGGgGCGCGGGCgccccuggcgGGCgCCGgGUGGa- -3' miRNA: 3'- -CCCaUGCGCUCG----------UCGaGGCgCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 62008 | 0.66 | 0.722743 |
Target: 5'- cGGUGCGCGGGaCAGg-CCGCggcgagGCGGcCu -3' miRNA: 3'- cCCAUGCGCUC-GUCgaGGCG------CGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 79103 | 0.66 | 0.722743 |
Target: 5'- ---aACGgGguAGCGGCgugCCGCGCGGaUCg -3' miRNA: 3'- cccaUGCgC--UCGUCGa--GGCGCGCC-AG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 122461 | 0.66 | 0.722743 |
Target: 5'- cGGGgGCGCGGGCgccccuggcgGGCgCCGgGUGGa- -3' miRNA: 3'- -CCCaUGCGCUCG----------UCGaGGCgCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 117260 | 0.66 | 0.722743 |
Target: 5'- cGGGccCGcCGAGC-GCUCCG-GCGGg- -3' miRNA: 3'- -CCCauGC-GCUCGuCGAGGCgCGCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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