miRNA display CGI


Results 21 - 40 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 7686 0.68 0.628827
Target:  5'- gGGGUGgGCGGGC-GCgggggucgcgccgagUCCGCgGCGGg- -3'
miRNA:   3'- -CCCAUgCGCUCGuCG---------------AGGCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 8023 0.7 0.480653
Target:  5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3'
miRNA:   3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 8302 0.66 0.741704
Target:  5'- --cUGCGCcGGgAGCUCCGCGCGu-- -3'
miRNA:   3'- cccAUGCGcUCgUCGAGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 10938 0.69 0.575652
Target:  5'- gGGGU-CGCGAuauCGGCucgugucaUCCGCGCGGa- -3'
miRNA:   3'- -CCCAuGCGCUc--GUCG--------AGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 11156 1.12 0.000813
Target:  5'- cGGGUACGCGAGCAGCUCCGCGCGGUCa -3'
miRNA:   3'- -CCCAUGCGCUCGUCGAGGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 11597 0.68 0.605122
Target:  5'- aGGGacgccGCGCGAGCAgGgUCCGUaGCGG-Cg -3'
miRNA:   3'- -CCCa----UGCGCUCGU-CgAGGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 11685 0.66 0.732264
Target:  5'- cGGcACuCGGGCAGCUgCGgGUGGUa -3'
miRNA:   3'- cCCaUGcGCUCGUCGAgGCgCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 12361 0.67 0.674212
Target:  5'- --cUugGCGGGgGGCgcgcccggCCGCGCGGcCg -3'
miRNA:   3'- cccAugCGCUCgUCGa-------GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 13216 0.69 0.575652
Target:  5'- cGGGaugGCGAucuGC-GCgaUCCGCGCGGUCg -3'
miRNA:   3'- -CCCaugCGCU---CGuCG--AGGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 13333 0.7 0.499108
Target:  5'- cGGGggUGCG-GCGGUcccuUCCGCGCcgggGGUCg -3'
miRNA:   3'- -CCCauGCGCuCGUCG----AGGCGCG----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 13366 0.7 0.499108
Target:  5'- cGGGggUGCG-GCGGUcccuUCCGCGCcgggGGUCg -3'
miRNA:   3'- -CCCauGCGCuCGUCG----AGGCGCG----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 14100 0.71 0.444787
Target:  5'- cGGGUgaACGCGGGgAGCgcgCCGUGCGuGa- -3'
miRNA:   3'- -CCCA--UGCGCUCgUCGa--GGCGCGC-Cag -5'
21567 3' -60.4 NC_004812.1 + 14574 0.71 0.471551
Target:  5'- aGGGgcaggccCGCGGGCGuCUCCaGCGCGGcCa -3'
miRNA:   3'- -CCCau-----GCGCUCGUcGAGG-CGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 15742 0.69 0.556183
Target:  5'- aGGGgccGCGgGGGCcGC-CCGCGCcGUCa -3'
miRNA:   3'- -CCCa--UGCgCUCGuCGaGGCGCGcCAG- -5'
21567 3' -60.4 NC_004812.1 + 15941 0.7 0.480653
Target:  5'- gGGGUcACGCGuagacguaGGCGGCgcguggcgccgCCGCGCGG-Cg -3'
miRNA:   3'- -CCCA-UGCGC--------UCGUCGa----------GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 16512 0.69 0.565896
Target:  5'- gGGGcGCGgGGGCGaugcGCUCaCGCGUGGg- -3'
miRNA:   3'- -CCCaUGCgCUCGU----CGAG-GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 16705 0.76 0.236537
Target:  5'- cGGGUGCGCGAGCGa--CCGCGgGGcCg -3'
miRNA:   3'- -CCCAUGCGCUCGUcgaGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 18171 0.67 0.654519
Target:  5'- -cGU-CGgGAGCGGgUCCcCGCGGUCc -3'
miRNA:   3'- ccCAuGCgCUCGUCgAGGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 18188 0.66 0.751055
Target:  5'- uGGG-GCGCcGGCAGCcccccgcgUCCaCGCGGUa -3'
miRNA:   3'- -CCCaUGCGcUCGUCG--------AGGcGCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 18275 0.66 0.751055
Target:  5'- -cGUGCGCGAuccGCAGggccucCUCCGCGcCGG-Cg -3'
miRNA:   3'- ccCAUGCGCU---CGUC------GAGGCGC-GCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.