Results 21 - 40 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 127302 | 0.66 | 0.953905 |
Target: 5'- gGAGCgCGUGCAucGGgccccgGCUGCGCGC-CUc -3' miRNA: 3'- gUUCG-GCGCGU--UCa-----UGAUGUGCGcGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 109711 | 0.66 | 0.940737 |
Target: 5'- --cGCCGCGCug--GCgGC-CGCGCUg -3' miRNA: 3'- guuCGGCGCGuucaUGaUGuGCGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 140648 | 0.66 | 0.945369 |
Target: 5'- --cGCCGCGCGGcgGCgccaACGCGCc -3' miRNA: 3'- guuCGGCGCGUUcaUGaug-UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 31610 | 0.66 | 0.945369 |
Target: 5'- --cGCCGCGCAGGg---GCGCcuccaGCGCc -3' miRNA: 3'- guuCGGCGCGUUCaugaUGUG-----CGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 130555 | 0.66 | 0.953905 |
Target: 5'- gGGGgCGCGCGAGg---GCGcCGCGCc -3' miRNA: 3'- gUUCgGCGCGUUCaugaUGU-GCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 109899 | 0.66 | 0.935858 |
Target: 5'- gGAGCCGauucCGUucGAGcgGCUGCACGuCGCg -3' miRNA: 3'- gUUCGGC----GCG--UUCa-UGAUGUGC-GCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 89830 | 0.66 | 0.945369 |
Target: 5'- -uGGCUggagGCGCGGGUGC-AgGCGUGCg -3' miRNA: 3'- guUCGG----CGCGUUCAUGaUgUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 128646 | 0.66 | 0.940737 |
Target: 5'- -cAGCgGCGCGuAGaGCaccaGCACGCGCa -3' miRNA: 3'- guUCGgCGCGU-UCaUGa---UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 45535 | 0.66 | 0.940737 |
Target: 5'- --cGUCGCGCcAGUagGCgcGCAUGCGCg -3' miRNA: 3'- guuCGGCGCGuUCA--UGa-UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 114699 | 0.66 | 0.935858 |
Target: 5'- gGGGCCGCGgggGAGUACgugaUGCACgGCGUc -3' miRNA: 3'- gUUCGGCGCg--UUCAUG----AUGUG-CGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 95012 | 0.66 | 0.953905 |
Target: 5'- --cGCuCGCGCAGGUGCUGgggcucCAC-CGCc -3' miRNA: 3'- guuCG-GCGCGUUCAUGAU------GUGcGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 71901 | 0.66 | 0.949758 |
Target: 5'- gCGGGCCGgGCGgcgcGGcGCcGCGgGCGCUg -3' miRNA: 3'- -GUUCGGCgCGU----UCaUGaUGUgCGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 22903 | 0.66 | 0.949758 |
Target: 5'- cCGAGgUGCGCGGGgGCgugGC-CGCGCc -3' miRNA: 3'- -GUUCgGCGCGUUCaUGa--UGuGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 133408 | 0.66 | 0.945369 |
Target: 5'- uGGGCgGCG-AAGUACgucagACACGCGa- -3' miRNA: 3'- gUUCGgCGCgUUCAUGa----UGUGCGCga -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 3137 | 0.66 | 0.940737 |
Target: 5'- -cAGCgGCGCGuAGaGCaccaGCACGCGCa -3' miRNA: 3'- guUCGgCGCGU-UCaUGa---UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 16917 | 0.66 | 0.935858 |
Target: 5'- --uGCUGCGCAuggccugcgaGGUGCggcagGCuACGCGCc -3' miRNA: 3'- guuCGGCGCGU----------UCAUGa----UG-UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 123881 | 0.66 | 0.935858 |
Target: 5'- --cGCCGCGUAcaUGCcGCgggACGCGCUg -3' miRNA: 3'- guuCGGCGCGUucAUGaUG---UGCGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 108176 | 0.66 | 0.940737 |
Target: 5'- gGGGCC-CGCGAGcgAgaAgGCGCGCUa -3' miRNA: 3'- gUUCGGcGCGUUCa-UgaUgUGCGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 79527 | 0.66 | 0.953905 |
Target: 5'- --cGCCGCGCAgcGGaUGCgaaacgacgACGCgGCGCUc -3' miRNA: 3'- guuCGGCGCGU--UC-AUGa--------UGUG-CGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 46855 | 0.66 | 0.940737 |
Target: 5'- gGGGuuGCGCGcGU---GCACGCGCc -3' miRNA: 3'- gUUCggCGCGUuCAugaUGUGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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