miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 121714 0.65 0.957434
Target:  5'- gGAGCgGCggcgagaGCAGGUGCccggGCcgGCGCGCg -3'
miRNA:   3'- gUUCGgCG-------CGUUCAUGa---UG--UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152615 0.65 0.957434
Target:  5'- gGAGCgGCggcgagaGCAGGUGCccggGCcgGCGCGCg -3'
miRNA:   3'- gUUCGgCG-------CGUUCAUGa---UG--UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 112783 0.66 0.940737
Target:  5'- gCGAGCCGCGCGGcgGCUcccccgucggGCguguggGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGA----------UG------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 49575 0.66 0.945369
Target:  5'- aCGAGCaGgGCcuGggGCUGCugGCGCa -3'
miRNA:   3'- -GUUCGgCgCGuuCa-UGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 35620 0.66 0.945369
Target:  5'- cCGGGCCGaaCGCGGgggaggguugacGUGCcgcggGCGCGCGCg -3'
miRNA:   3'- -GUUCGGC--GCGUU------------CAUGa----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 114699 0.66 0.935858
Target:  5'- gGGGCCGCGgggGAGUACgugaUGCACgGCGUc -3'
miRNA:   3'- gUUCGGCGCg--UUCAUG----AUGUG-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 71901 0.66 0.949758
Target:  5'- gCGGGCCGgGCGgcgcGGcGCcGCGgGCGCUg -3'
miRNA:   3'- -GUUCGGCgCGU----UCaUGaUGUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 31610 0.66 0.945369
Target:  5'- --cGCCGCGCAGGg---GCGCcuccaGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCaugaUGUG-----CGCGa -5'
21567 5' -54.1 NC_004812.1 + 128646 0.66 0.940737
Target:  5'- -cAGCgGCGCGuAGaGCaccaGCACGCGCa -3'
miRNA:   3'- guUCGgCGCGU-UCaUGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 109899 0.66 0.935858
Target:  5'- gGAGCCGauucCGUucGAGcgGCUGCACGuCGCg -3'
miRNA:   3'- gUUCGGC----GCG--UUCa-UGAUGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 16917 0.66 0.935858
Target:  5'- --uGCUGCGCAuggccugcgaGGUGCggcagGCuACGCGCc -3'
miRNA:   3'- guuCGGCGCGU----------UCAUGa----UG-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 45535 0.66 0.940737
Target:  5'- --cGUCGCGCcAGUagGCgcGCAUGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCA--UGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 140648 0.66 0.945369
Target:  5'- --cGCCGCGCGGcgGCgccaACGCGCc -3'
miRNA:   3'- guuCGGCGCGUUcaUGaug-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152321 0.66 0.94933
Target:  5'- --uGCgGCGCGcGUACgcgccccUGCugGCGCg -3'
miRNA:   3'- guuCGgCGCGUuCAUG-------AUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27459 0.66 0.944917
Target:  5'- gAGGCCGCGCAcGUuCaGCGCcgccccgGCGCg -3'
miRNA:   3'- gUUCGGCGCGUuCAuGaUGUG-------CGCGa -5'
21567 5' -54.1 NC_004812.1 + 20339 0.66 0.940737
Target:  5'- gCGGGCgCGCGCAGGcgaaa-GCGCGCc -3'
miRNA:   3'- -GUUCG-GCGCGUUCaugaugUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 60852 0.66 0.945369
Target:  5'- aGAGgCGCGuCAGGUuCgggGCGCGCgGCUg -3'
miRNA:   3'- gUUCgGCGC-GUUCAuGa--UGUGCG-CGA- -5'
21567 5' -54.1 NC_004812.1 + 144242 0.66 0.949758
Target:  5'- -cGGCCGCGCG---GCcGgGCGCGCc -3'
miRNA:   3'- guUCGGCGCGUucaUGaUgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 121155 0.66 0.935356
Target:  5'- aGGGUgGCGCGAGUccagacuguggaaGCUGCggccgcccagcaGCGCGCc -3'
miRNA:   3'- gUUCGgCGCGUUCA-------------UGAUG------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 89830 0.66 0.945369
Target:  5'- -uGGCUggagGCGCGGGUGC-AgGCGUGCg -3'
miRNA:   3'- guUCGG----CGCGUUCAUGaUgUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.