miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 11193 1.07 0.005456
Target:  5'- gCAAGCCGCGCAAGUACUACACGCGCUc -3'
miRNA:   3'- -GUUCGGCGCGUUCAUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 81857 0.84 0.177859
Target:  5'- gGGGCCGCGCGcgAGcaGCUGCGCGCGCUc -3'
miRNA:   3'- gUUCGGCGCGU--UCa-UGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 46575 0.81 0.240698
Target:  5'- --cGCCGCGCAccgcccGGggACUACACGCGCUc -3'
miRNA:   3'- guuCGGCGCGU------UCa-UGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 111746 0.8 0.271933
Target:  5'- --cGCCGCGCucGUGC-GCGCGCGCUa -3'
miRNA:   3'- guuCGGCGCGuuCAUGaUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 154065 0.8 0.271933
Target:  5'- --cGCCGCGCGAGUACcGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28557 0.8 0.271933
Target:  5'- --cGCCGCGCGAGUACcGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27228 0.8 0.285311
Target:  5'- -uGGCUGCGCGAGcUGCgccGCACGCGCg -3'
miRNA:   3'- guUCGGCGCGUUC-AUGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152736 0.8 0.285311
Target:  5'- -uGGCUGCGCGAGcUGCgccGCACGCGCg -3'
miRNA:   3'- guUCGGCGCGUUC-AUGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151696 0.8 0.292192
Target:  5'- cCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26188 0.8 0.299203
Target:  5'- gCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 42880 0.79 0.313612
Target:  5'- --cGCCGCGCAccUugUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAugAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 41208 0.79 0.328541
Target:  5'- --cGCCGCGCGGGgcggcgACUACGCGCuGCg -3'
miRNA:   3'- guuCGGCGCGUUCa-----UGAUGUGCG-CGa -5'
21567 5' -54.1 NC_004812.1 + 154976 0.78 0.368126
Target:  5'- gCGGGCCGCGCGGG-ACc-CGCGCGCa -3'
miRNA:   3'- -GUUCGGCGCGUUCaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 29468 0.78 0.368126
Target:  5'- gCGGGCCGCGCGGG-ACc-CGCGCGCa -3'
miRNA:   3'- -GUUCGGCGCGUUCaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 3926 0.77 0.402072
Target:  5'- gGGGCCGCGCGGcgGCggcacgGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUcaUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 129434 0.77 0.402072
Target:  5'- gGGGCCGCGCGGcgGCggcacgGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUcaUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 156181 0.77 0.419774
Target:  5'- gCGGGCgCGCGCGAGaGCgcCGCGCGCg -3'
miRNA:   3'- -GUUCG-GCGCGUUCaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 125280 0.77 0.419774
Target:  5'- gCGGGCgCGCGCGAGaGCgcCGCGCGCg -3'
miRNA:   3'- -GUUCG-GCGCGUUCaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 62686 0.77 0.437939
Target:  5'- --cGCCGUGCAcguGUACgGCACGCGCc -3'
miRNA:   3'- guuCGGCGCGUu--CAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 74747 0.76 0.44719
Target:  5'- gGAGCgCGCGCAGcUGCU-CGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUcAUGAuGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.