miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 154287 0.73 0.638199
Target:  5'- --cGCUGCGCGccuuCUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucauGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 100904 0.76 0.456547
Target:  5'- --cGCCgaGCGCGGGUGCagGCGCGCGCc -3'
miRNA:   3'- guuCGG--CGCGUUCAUGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 155031 0.75 0.491072
Target:  5'- gGAGCCGUGCGGGggggacccgggcgGCU-CGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUCa------------UGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 15324 0.74 0.584012
Target:  5'- gCAGGCCGCGCGAGggggaagugACGCaGCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUCauga-----UGUG-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 110633 0.74 0.586085
Target:  5'- --cGCCGgaCGCGGGggaGCUGCGCGUGCUg -3'
miRNA:   3'- guuCGGC--GCGUUCa--UGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 16498 0.74 0.596469
Target:  5'- ---uUCGCGUccGUGCUGCGCGCGCc -3'
miRNA:   3'- guucGGCGCGuuCAUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152864 0.73 0.60688
Target:  5'- --cGCCGCGCc---GCUGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26275 0.73 0.617311
Target:  5'- -cGGCCGCGCGGGUGCccCGCG-GCg -3'
miRNA:   3'- guUCGGCGCGUUCAUGauGUGCgCGa -5'
21567 5' -54.1 NC_004812.1 + 143447 0.73 0.627753
Target:  5'- gGAGCUGCGCGuGUugUcucGCGCGuCGCUg -3'
miRNA:   3'- gUUCGGCGCGUuCAugA---UGUGC-GCGA- -5'
21567 5' -54.1 NC_004812.1 + 128172 0.76 0.456547
Target:  5'- gAGGCgCGCGCAGGcgGCcucgACGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa-UGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154333 0.76 0.44719
Target:  5'- --cGCCGCGCcgcucGUGCUGCGCGCGg- -3'
miRNA:   3'- guuCGGCGCGuu---CAUGAUGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 74747 0.76 0.44719
Target:  5'- gGAGCgCGCGCAGcUGCU-CGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUcAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154065 0.8 0.271933
Target:  5'- --cGCCGCGCGAGUACcGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152736 0.8 0.285311
Target:  5'- -uGGCUGCGCGAGcUGCgccGCACGCGCg -3'
miRNA:   3'- guUCGGCGCGUUC-AUGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151696 0.8 0.292192
Target:  5'- cCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 42880 0.79 0.313612
Target:  5'- --cGCCGCGCAccUugUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAugAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154976 0.78 0.368126
Target:  5'- gCGGGCCGCGCGGG-ACc-CGCGCGCa -3'
miRNA:   3'- -GUUCGGCGCGUUCaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 129434 0.77 0.402072
Target:  5'- gGGGCCGCGCGGcgGCggcacgGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUcaUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 125280 0.77 0.419774
Target:  5'- gCGGGCgCGCGCGAGaGCgcCGCGCGCg -3'
miRNA:   3'- -GUUCG-GCGCGUUCaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 62686 0.77 0.437939
Target:  5'- --cGCCGUGCAcguGUACgGCACGCGCc -3'
miRNA:   3'- guuCGGCGCGUu--CAUGaUGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.