miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 47 0.68 0.880833
Target:  5'- gCGGGCCGCGgGcgcggcggcgcGGcGCcACGCGCGCg -3'
miRNA:   3'- -GUUCGGCGCgU-----------UCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 120 0.68 0.880833
Target:  5'- -cGGCCcgucccuCGCGAGUGC-GCGCGCGUg -3'
miRNA:   3'- guUCGGc------GCGUUCAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 175 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 314 0.68 0.897435
Target:  5'- aGAGCgCGgGCAaccagcacgucgggaGGUGCgucCACGCGCUc -3'
miRNA:   3'- gUUCG-GCgCGU---------------UCAUGau-GUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 416 0.68 0.901371
Target:  5'- gCAGGCCuuccGCGCGcGGcGCUcucGCGCGCGCc -3'
miRNA:   3'- -GUUCGG----CGCGU-UCaUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 461 0.68 0.901371
Target:  5'- cCGGGCCgccgGCGCGccugcGUGC-GCACGCGCc -3'
miRNA:   3'- -GUUCGG----CGCGUu----CAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 1017 0.67 0.925355
Target:  5'- gGGGCCGCGCccccgcGAGggcccgGCcgcccGCGCGCGCc -3'
miRNA:   3'- gUUCGGCGCG------UUCa-----UGa----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 1520 0.68 0.87352
Target:  5'- --cGCCGCGCGAGg---GCAUGcCGCc -3'
miRNA:   3'- guuCGGCGCGUUCaugaUGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 1610 0.66 0.953905
Target:  5'- cCGGGCgcccCGCGCGAGggACcgUGCGCGCGg- -3'
miRNA:   3'- -GUUCG----GCGCGUUCa-UG--AUGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 1794 0.66 0.953905
Target:  5'- gGAGCgCGUGCAucGGgccccgGCUGCGCGC-CUc -3'
miRNA:   3'- gUUCG-GCGCGU--UCa-----UGAUGUGCGcGA- -5'
21567 5' -54.1 NC_004812.1 + 2287 0.68 0.865217
Target:  5'- aCGAGCgGCGCGgcgucggGGUccgGCUcgagcaggGCGCGCGCg -3'
miRNA:   3'- -GUUCGgCGCGU-------UCA---UGA--------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 2664 0.76 0.456547
Target:  5'- gAGGCgCGCGCAGGcgGCcucgACGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa-UGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 2735 0.67 0.913857
Target:  5'- --cGCgGCGCAGGU----CGCGCGCg -3'
miRNA:   3'- guuCGgCGCGUUCAugauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 3137 0.66 0.940737
Target:  5'- -cAGCgGCGCGuAGaGCaccaGCACGCGCa -3'
miRNA:   3'- guUCGgCGCGU-UCaUGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 3265 0.72 0.690178
Target:  5'- gCGGGCCGCagcgcgcggcgaGCGAGgcCaGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG------------CGUUCauGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 3926 0.77 0.402072
Target:  5'- gGGGCCGCGCGGcgGCggcacgGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUcaUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 4712 0.68 0.865983
Target:  5'- --cGCCGCGCGAGgACgGgGCGUGUg -3'
miRNA:   3'- guuCGGCGCGUUCaUGaUgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 4725 0.69 0.850256
Target:  5'- cCAGGCCGCc---GUAgaGCACGCGCc -3'
miRNA:   3'- -GUUCGGCGcguuCAUgaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 5046 0.66 0.953905
Target:  5'- gGGGgCGCGCGAGg---GCGcCGCGCc -3'
miRNA:   3'- gUUCgGCGCGUUCaugaUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 6048 0.68 0.901371
Target:  5'- --cGCCGCGCGGcUAUcgACAcCGCGCa -3'
miRNA:   3'- guuCGGCGCGUUcAUGa-UGU-GCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.