miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 3137 0.66 0.940737
Target:  5'- -cAGCgGCGCGuAGaGCaccaGCACGCGCa -3'
miRNA:   3'- guUCGgCGCGU-UCaUGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 20339 0.66 0.940737
Target:  5'- gCGGGCgCGCGCAGGcgaaa-GCGCGCc -3'
miRNA:   3'- -GUUCG-GCGCGUUCaugaugUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 45535 0.66 0.940737
Target:  5'- --cGUCGCGCcAGUagGCgcGCAUGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCA--UGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 128646 0.66 0.940737
Target:  5'- -cAGCgGCGCGuAGaGCaccaGCACGCGCa -3'
miRNA:   3'- guUCGgCGCGU-UCaUGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 112783 0.66 0.940737
Target:  5'- gCGAGCCGCGCGGcgGCUcccccgucggGCguguggGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGA----------UG------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 108176 0.66 0.940737
Target:  5'- gGGGCC-CGCGAGcgAgaAgGCGCGCUa -3'
miRNA:   3'- gUUCGGcGCGUUCa-UgaUgUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 109711 0.66 0.940737
Target:  5'- --cGCCGCGCug--GCgGC-CGCGCUg -3'
miRNA:   3'- guuCGGCGCGuucaUGaUGuGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 46855 0.66 0.940737
Target:  5'- gGGGuuGCGCGcGU---GCACGCGCc -3'
miRNA:   3'- gUUCggCGCGUuCAugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 16917 0.66 0.935858
Target:  5'- --uGCUGCGCAuggccugcgaGGUGCggcagGCuACGCGCc -3'
miRNA:   3'- guuCGGCGCGU----------UCAUGa----UG-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 114699 0.66 0.935858
Target:  5'- gGGGCCGCGgggGAGUACgugaUGCACgGCGUc -3'
miRNA:   3'- gUUCGGCGCg--UUCAUG----AUGUG-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 109899 0.66 0.935858
Target:  5'- gGAGCCGauucCGUucGAGcgGCUGCACGuCGCg -3'
miRNA:   3'- gUUCGGC----GCG--UUCa-UGAUGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 40201 0.66 0.935858
Target:  5'- gCGGGCCGCGgGGGcuCUGCGCGgGg- -3'
miRNA:   3'- -GUUCGGCGCgUUCauGAUGUGCgCga -5'
21567 5' -54.1 NC_004812.1 + 123881 0.66 0.935858
Target:  5'- --cGCCGCGUAcaUGCcGCgggACGCGCUg -3'
miRNA:   3'- guuCGGCGCGUucAUGaUG---UGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 152056 0.66 0.935356
Target:  5'- aGGGUgGCGCGAGUccagacuguggaaGCUGCggccgcccagcaGCGCGCc -3'
miRNA:   3'- gUUCGgCGCGUUCA-------------UGAUG------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30155 0.66 0.935356
Target:  5'- -cAGCCGgGCcaggagccaaccuAGGUGCcGCGCGCgGCUg -3'
miRNA:   3'- guUCGGCgCG-------------UUCAUGaUGUGCG-CGA- -5'
21567 5' -54.1 NC_004812.1 + 121155 0.66 0.935356
Target:  5'- aGGGUgGCGCGAGUccagacuguggaaGCUGCggccgcccagcaGCGCGCc -3'
miRNA:   3'- gUUCGgCGCGUUCA-------------UGAUG------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 74945 0.67 0.932812
Target:  5'- gGAGCCGUcgcgcgccgcggucaGCGGGUGCgccucgaagACGCGcCGCg -3'
miRNA:   3'- gUUCGGCG---------------CGUUCAUGa--------UGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 40414 0.67 0.930731
Target:  5'- cCAGGCCGCGUAGuaGCccgcCACgGCGCUc -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGau--GUG-CGCGA- -5'
21567 5' -54.1 NC_004812.1 + 88750 0.67 0.930731
Target:  5'- aCGGGCUGCGCAAcaGCcaguuCAuCGCGCUg -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGau---GU-GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 120789 0.67 0.930731
Target:  5'- aAAGaccCCGCGCGGGUuuAUUcGCugGCGCa -3'
miRNA:   3'- gUUC---GGCGCGUUCA--UGA-UGugCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.