miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 7902 0.7 0.797463
Target:  5'- aGGGUCGCccGCAGGUgucggggGCUGCGgCGCGCg -3'
miRNA:   3'- gUUCGGCG--CGUUCA-------UGAUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 9234 0.71 0.730908
Target:  5'- gAGGCCcCGCGuuccaucgACUACGCGCGCa -3'
miRNA:   3'- gUUCGGcGCGUuca-----UGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 11193 1.07 0.005456
Target:  5'- gCAAGCCGCGCAAGUACUACACGCGCUc -3'
miRNA:   3'- -GUUCGGCGCGUUCAUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 13157 0.72 0.690178
Target:  5'- -cAGCgaCGCGCGAG-ACaACACGCGCa -3'
miRNA:   3'- guUCG--GCGCGUUCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 14367 0.7 0.770213
Target:  5'- -cGGCCGCGCGGGcGCgGCG-GCGCa -3'
miRNA:   3'- guUCGGCGCGUUCaUGaUGUgCGCGa -5'
21567 5' -54.1 NC_004812.1 + 15324 0.74 0.584012
Target:  5'- gCAGGCCGCGCGAGggggaagugACGCaGCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUCauga-----UGUG-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 16498 0.74 0.596469
Target:  5'- ---uUCGCGUccGUGCUGCGCGCGCc -3'
miRNA:   3'- guucGGCGCGuuCAUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 16917 0.66 0.935858
Target:  5'- --uGCUGCGCAuggccugcgaGGUGCggcagGCuACGCGCc -3'
miRNA:   3'- guuCGGCGCGU----------UCAUGa----UG-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 19503 0.67 0.930731
Target:  5'- aAGGUCaGCGUcguGUACU-CGCGCGCg -3'
miRNA:   3'- gUUCGG-CGCGuu-CAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 19827 0.69 0.82514
Target:  5'- aGGGCCaccagcGCGCAcgcGUACaGCGCGCGCc -3'
miRNA:   3'- gUUCGG------CGCGUu--CAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 20295 0.71 0.740893
Target:  5'- uGGGCgGCGCGccGGcGCaGCGCGCGCg -3'
miRNA:   3'- gUUCGgCGCGU--UCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 20325 0.67 0.907736
Target:  5'- gGGGCCGCGacgcguCGAGUGCagggcggGCACGgGCc -3'
miRNA:   3'- gUUCGGCGC------GUUCAUGa------UGUGCgCGa -5'
21567 5' -54.1 NC_004812.1 + 20339 0.66 0.940737
Target:  5'- gCGGGCgCGCGCAGGcgaaa-GCGCGCc -3'
miRNA:   3'- -GUUCG-GCGCGUUCaugaugUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 20403 0.68 0.901371
Target:  5'- aGAGCUgGCgGUggGUGCgGCAgGCGCUg -3'
miRNA:   3'- gUUCGG-CG-CGuuCAUGaUGUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 21019 0.66 0.949758
Target:  5'- -cGGCCGCGgGGGUGCauggggugGC-UGCGCg -3'
miRNA:   3'- guUCGGCGCgUUCAUGa-------UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 21536 0.69 0.850256
Target:  5'- -uGGCCGCaCGGGUACggACACGUGgUg -3'
miRNA:   3'- guUCGGCGcGUUCAUGa-UGUGCGCgA- -5'
21567 5' -54.1 NC_004812.1 + 22903 0.66 0.949758
Target:  5'- cCGAGgUGCGCGGGgGCgugGC-CGCGCc -3'
miRNA:   3'- -GUUCgGCGCGUUCaUGa--UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 23497 0.7 0.769253
Target:  5'- gGGGCUGCugucgcacuacguGCGGGUGCUGCugGgGCc -3'
miRNA:   3'- gUUCGGCG-------------CGUUCAUGAUGugCgCGa -5'
21567 5' -54.1 NC_004812.1 + 26188 0.8 0.299203
Target:  5'- gCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26275 0.73 0.617311
Target:  5'- -cGGCCGCGCGGGUGCccCGCG-GCg -3'
miRNA:   3'- guUCGGCGCGUUCAUGauGUGCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.