miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 83549 0.72 0.381083
Target:  5'- gGAGCGCgGUCUCCGgGAGGcCGUGCg- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 73895 0.72 0.397921
Target:  5'- cGGCG-GCCgcggCCGCcGAGUCGCGCc- -3'
miRNA:   3'- uUCGCgCGGa---GGCGuUUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 71272 0.72 0.406518
Target:  5'- gGGGCGCGCCgCCG-AAAGUCGcCGCc- -3'
miRNA:   3'- -UUCGCGCGGaGGCgUUUCAGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 26175 0.71 0.418747
Target:  5'- cAGCGcCGCCUCCGCGGgccgcagcgagcggcGG-CGCGCg- -3'
miRNA:   3'- uUCGC-GCGGAGGCGUU---------------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 21879 0.71 0.424056
Target:  5'- cAGGCGCGCCUCCaGCuccccGAAGaacgucccgguUCGCGCa- -3'
miRNA:   3'- -UUCGCGCGGAGG-CG-----UUUC-----------AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 127686 0.71 0.424056
Target:  5'- cGGGCGCGCaUUCCGCGAaccGGagGCGCg- -3'
miRNA:   3'- -UUCGCGCG-GAGGCGUU---UCagCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 47326 0.71 0.45119
Target:  5'- cGGGCGCgcagguagGCCUCUGC--GGUCGCGCc- -3'
miRNA:   3'- -UUCGCG--------CGGAGGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96541 0.71 0.45119
Target:  5'- -cGCGUGCgCUCCGCccugccgcuGUCGCGCg- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuuu------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 125705 0.71 0.45119
Target:  5'- -cGCGCGCCgCCGgGggagggcccGGGUCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCgU---------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 84746 0.71 0.45119
Target:  5'- -uGCGCGCgCUCCuGCAGGGgaUCGUGCg- -3'
miRNA:   3'- uuCGCGCG-GAGG-CGUUUC--AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 196 0.71 0.45119
Target:  5'- -cGCGCGCCgCCGgGggagggcccGGGUCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCgU---------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 98588 0.71 0.460445
Target:  5'- gAGGgGCGCgUCCGUcAGGUCGuCGCUc -3'
miRNA:   3'- -UUCgCGCGgAGGCGuUUCAGC-GCGAa -5'
21582 5' -58.9 NC_004812.1 + 46954 0.7 0.466983
Target:  5'- -cGCGCGUC-CCGCGAGaugcgaucccagucGUCGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUU--------------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 91505 0.7 0.469799
Target:  5'- gGGGcCGCGCCagccacuccUCCGCGGGG-CGCGCg- -3'
miRNA:   3'- -UUC-GCGCGG---------AGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 121328 0.7 0.479249
Target:  5'- cGGGCGaCGCCUCgGCcAGGgCGCGCg- -3'
miRNA:   3'- -UUCGC-GCGGAGgCGuUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 105473 0.7 0.479249
Target:  5'- -cGCGCGCCUCCcCGGGGUaguaggGCGCg- -3'
miRNA:   3'- uuCGCGCGGAGGcGUUUCAg-----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20104 0.7 0.479249
Target:  5'- gGAGCGCGCCgCgCGCAgcGgCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaG-GCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 152229 0.7 0.479249
Target:  5'- cGGGCGaCGCCUCgGCcAGGgCGCGCg- -3'
miRNA:   3'- -UUCGC-GCGGAGgCGuUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 94225 0.7 0.488792
Target:  5'- gGGGCGCGCUUCagGCGAccGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCGGAGg-CGUUu-CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 151371 0.7 0.498422
Target:  5'- cGGCGCGCCccgacggCCGCGAGGcCGaCGCc- -3'
miRNA:   3'- uUCGCGCGGa------GGCGUUUCaGC-GCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.