miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 20356 1.03 0.002878
Target:  5'- aAAGCGCGCCUCCGCAAAGUCGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGAGGCGUUUCAGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 53792 0.81 0.108937
Target:  5'- gAGGCGCGCCgccCCGUggaGAGGUCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa--GGCG---UUUCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 100364 0.77 0.182677
Target:  5'- gGGGCGCGCCcCCGCGgacGAGUCgGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGU---UUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1738 0.77 0.201948
Target:  5'- -cGCGCGCCUCCGCGgcccGAGccCGCGCc- -3'
miRNA:   3'- uuCGCGCGGAGGCGU----UUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 76839 0.77 0.201948
Target:  5'- gGGGCGCGCCUgCGCGgcGUCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGAgGCGUuuCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 127246 0.77 0.201948
Target:  5'- -cGCGCGCCUCCGCGgcccGAGccCGCGCc- -3'
miRNA:   3'- uuCGCGCGGAGGCGU----UUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 97136 0.76 0.222962
Target:  5'- cGGCGCGCCucUCCGC--GGUCGCGUg- -3'
miRNA:   3'- uUCGCGCGG--AGGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 56238 0.75 0.251813
Target:  5'- cGGCGCGCCgacucgUCCGCGGGGgCGCGCc- -3'
miRNA:   3'- uUCGCGCGG------AGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 150779 0.74 0.290411
Target:  5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3'
miRNA:   3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 74253 0.74 0.290411
Target:  5'- -cGCGCGUCUCUGCGAGGcCGCGg-- -3'
miRNA:   3'- uuCGCGCGGAGGCGUUUCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 119878 0.74 0.290411
Target:  5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3'
miRNA:   3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 113235 0.74 0.297278
Target:  5'- gGAGCGCGCggCCGCGGAG-CGCGUc- -3'
miRNA:   3'- -UUCGCGCGgaGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 85419 0.74 0.30427
Target:  5'- uGGCGCGgC-CCGCGGuGUCGCGCUc -3'
miRNA:   3'- uUCGCGCgGaGGCGUUuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 136251 0.74 0.318631
Target:  5'- cAAGCGCGaCUuuGCGGAGgCGCGCUUu -3'
miRNA:   3'- -UUCGCGCgGAggCGUUUCaGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 141412 0.73 0.326
Target:  5'- gGAGCGCGCCUgCCGCAgcGUCcuccucuggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA-GGCGUuuCAG---------CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 100960 0.73 0.341116
Target:  5'- gGGGCGCGCCgCCGCGGAcGUC-CGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGUUU-CAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 62257 0.73 0.341116
Target:  5'- cAGCGCGCCggggCCGCGccG-CGCGCg- -3'
miRNA:   3'- uUCGCGCGGa---GGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 73144 0.73 0.348862
Target:  5'- cGGCGCGCCgCCGCGGAccagcaCGCGCUg -3'
miRNA:   3'- uUCGCGCGGaGGCGUUUca----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 112312 0.72 0.372844
Target:  5'- cGAGuCGCGCCUcgggcggcuggCCGCGGaggcGGUCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGA-----------GGCGUU----UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83549 0.72 0.381083
Target:  5'- gGAGCGCgGUCUCCGgGAGGcCGUGCg- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUUUCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.