miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 49978 0.66 0.740629
Target:  5'- gGAGCgGCGaCUCCGguGAGcUgGCGCUg -3'
miRNA:   3'- -UUCG-CGCgGAGGCguUUC-AgCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 125420 0.66 0.710892
Target:  5'- cGGGCGCgGCCggacggCgGCGGAG-CGCGCg- -3'
miRNA:   3'- -UUCGCG-CGGa-----GgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 34674 0.66 0.750363
Target:  5'- cAGCGCGUCccccagCUGCGAGG-CGUGCg- -3'
miRNA:   3'- uUCGCGCGGa-----GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 44256 0.66 0.740629
Target:  5'- -cGCGaggGCCgauagCCGCu-GGUCGCGCg- -3'
miRNA:   3'- uuCGCg--CGGa----GGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112816 0.66 0.7308
Target:  5'- uGGGCGCGCCUCggaagGCGgcGUCgGCGUUc -3'
miRNA:   3'- -UUCGCGCGGAGg----CGUuuCAG-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 85289 0.66 0.740629
Target:  5'- cAGCGgGCC-CCaCGAAGcCGCGCa- -3'
miRNA:   3'- uUCGCgCGGaGGcGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 36253 0.66 0.750363
Target:  5'- -cGCGCGCCcCCGCG-GGUUGCa--- -3'
miRNA:   3'- uuCGCGCGGaGGCGUuUCAGCGcgaa -5'
21582 5' -58.9 NC_004812.1 + 9770 0.66 0.740629
Target:  5'- cGGCGCGCCggcggCCGCGcggguGUCcCGCg- -3'
miRNA:   3'- uUCGCGCGGa----GGCGUuu---CAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 17073 0.66 0.7308
Target:  5'- -uGCGCGCUgCCGCGAccAGUC-CGCc- -3'
miRNA:   3'- uuCGCGCGGaGGCGUU--UCAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 62398 0.66 0.719889
Target:  5'- gAAGCGCGCC-CCGCGggucuacugcgggGGGgaggaGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGU-------------UUCag---CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132849 0.66 0.759992
Target:  5'- cGAGCGCGCgCggUGCuugguGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCG-GagGCGuuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 82360 0.66 0.7308
Target:  5'- -cGCG-GCCU-CGCAGAGaCGCGCg- -3'
miRNA:   3'- uuCGCgCGGAgGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 18850 0.66 0.739651
Target:  5'- -cGCGCGCCUCgGCccagcgggucccgGGGGUCG-GCg- -3'
miRNA:   3'- uuCGCGCGGAGgCG-------------UUUCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 146344 0.66 0.744535
Target:  5'- -cGCGCGCCgucggCUGCGucGcggcguucguccucgUCGCGCUg -3'
miRNA:   3'- uuCGCGCGGa----GGCGUuuC---------------AGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 126436 0.66 0.710892
Target:  5'- -cGCGCGCCgagcCCGCcg---CGCGCUc -3'
miRNA:   3'- uuCGCGCGGa---GGCGuuucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 152858 0.66 0.720885
Target:  5'- cGGCGcCGCCgcgCCGCugcuGG-CGCGCg- -3'
miRNA:   3'- uUCGC-GCGGa--GGCGuu--UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 142241 0.66 0.740629
Target:  5'- uGGUGCGCCgCCGCGcc--CGCGCg- -3'
miRNA:   3'- uUCGCGCGGaGGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 86950 0.66 0.740629
Target:  5'- cGGCGCGCCaaaCCGCAGAccuUCGcCGCc- -3'
miRNA:   3'- uUCGCGCGGa--GGCGUUUc--AGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 92825 0.66 0.710892
Target:  5'- -uGCGCGCCggCCaGUAccccggccuGAGUCGCGUg- -3'
miRNA:   3'- uuCGCGCGGa-GG-CGU---------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 93102 0.66 0.7308
Target:  5'- cAGCGgGCgCUUCGCGGuGUCGgGCg- -3'
miRNA:   3'- uUCGCgCG-GAGGCGUUuCAGCgCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.