miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 103713 0.7 0.498422
Target:  5'- cGGCGCGCCgggaGCGAGGgaaacggCGCGCUc -3'
miRNA:   3'- uUCGCGCGGagg-CGUUUCa------GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 71272 0.72 0.406518
Target:  5'- gGGGCGCGCCgCCG-AAAGUCGcCGCc- -3'
miRNA:   3'- -UUCGCGCGGaGGCgUUUCAGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 21879 0.71 0.424056
Target:  5'- cAGGCGCGCCUCCaGCuccccGAAGaacgucccgguUCGCGCa- -3'
miRNA:   3'- -UUCGCGCGGAGG-CG-----UUUC-----------AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 125705 0.71 0.45119
Target:  5'- -cGCGCGCCgCCGgGggagggcccGGGUCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCgU---------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 84746 0.71 0.45119
Target:  5'- -uGCGCGCgCUCCuGCAGGGgaUCGUGCg- -3'
miRNA:   3'- uuCGCGCG-GAGG-CGUUUC--AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 96541 0.71 0.45119
Target:  5'- -cGCGUGCgCUCCGCccugccgcuGUCGCGCg- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuuu------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 98588 0.71 0.460445
Target:  5'- gAGGgGCGCgUCCGUcAGGUCGuCGCUc -3'
miRNA:   3'- -UUCgCGCGgAGGCGuUUCAGC-GCGAa -5'
21582 5' -58.9 NC_004812.1 + 121328 0.7 0.479249
Target:  5'- cGGGCGaCGCCUCgGCcAGGgCGCGCg- -3'
miRNA:   3'- -UUCGC-GCGGAGgCGuUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 80919 0.7 0.498422
Target:  5'- --cUGC-CCUCCGCGGAGUCGgGCg- -3'
miRNA:   3'- uucGCGcGGAGGCGUUUCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 73895 0.72 0.397921
Target:  5'- cGGCG-GCCgcggCCGCcGAGUCGCGCc- -3'
miRNA:   3'- uUCGCgCGGa---GGCGuUUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 83549 0.72 0.381083
Target:  5'- gGAGCGCgGUCUCCGgGAGGcCGUGCg- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 73144 0.73 0.348862
Target:  5'- cGGCGCGCCgCCGCGGAccagcaCGCGCUg -3'
miRNA:   3'- uUCGCGCGGaGGCGUUUca----GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 53792 0.81 0.108937
Target:  5'- gAGGCGCGCCgccCCGUggaGAGGUCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa--GGCG---UUUCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 76839 0.77 0.201948
Target:  5'- gGGGCGCGCCUgCGCGgcGUCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGAgGCGUuuCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 127246 0.77 0.201948
Target:  5'- -cGCGCGCCUCCGCGgcccGAGccCGCGCc- -3'
miRNA:   3'- uuCGCGCGGAGGCGU----UUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 97136 0.76 0.222962
Target:  5'- cGGCGCGCCucUCCGC--GGUCGCGUg- -3'
miRNA:   3'- uUCGCGCGG--AGGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 56238 0.75 0.251813
Target:  5'- cGGCGCGCCgacucgUCCGCGGGGgCGCGCc- -3'
miRNA:   3'- uUCGCGCGG------AGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 119878 0.74 0.290411
Target:  5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3'
miRNA:   3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 113235 0.74 0.297278
Target:  5'- gGAGCGCGCggCCGCGGAG-CGCGUc- -3'
miRNA:   3'- -UUCGCGCGgaGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 141412 0.73 0.326
Target:  5'- gGAGCGCGCCUgCCGCAgcGUCcuccucuggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA-GGCGUuuCAG---------CGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.