miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 196 0.71 0.45119
Target:  5'- -cGCGCGCCgCCGgGggagggcccGGGUCGCGCa- -3'
miRNA:   3'- uuCGCGCGGaGGCgU---------UUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 281 0.67 0.680547
Target:  5'- -cGCGCGCgCUCCGCcgccguccGGcCGCGCc- -3'
miRNA:   3'- uuCGCGCG-GAGGCGuu------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 443 0.68 0.629281
Target:  5'- -cGCGCGCCcgCCGCGAgcccgggccgccGG-CGCGCc- -3'
miRNA:   3'- uuCGCGCGGa-GGCGUU------------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 928 0.66 0.710892
Target:  5'- -cGCGCGCCgagcCCGCcg---CGCGCUc -3'
miRNA:   3'- uuCGCGCGGa---GGCGuuucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 1017 0.7 0.504241
Target:  5'- gGGGcCGCGCCcCCGCGAGGgcccggccgcccgCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGaGGCGUUUCa------------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1499 0.67 0.700833
Target:  5'- gGAGCGCcgGCCggcCCGCGccGcCGCGCg- -3'
miRNA:   3'- -UUCGCG--CGGa--GGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1738 0.77 0.201948
Target:  5'- -cGCGCGCCUCCGCGgcccGAGccCGCGCc- -3'
miRNA:   3'- uuCGCGCGGAGGCGU----UUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 2451 0.68 0.59848
Target:  5'- cGAGUGCGCCUcgCCGCGgcggAAGUCcgggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA--GGCGU----UUCAG----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 3599 0.68 0.608732
Target:  5'- cGGGCGCGCCg--GCGAGGagcucUUGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGaggCGUUUC-----AGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 4912 0.68 0.589275
Target:  5'- -cGCGCGCCgccgcucgcugcggcCCGCGGAGgcgGCGCUg -3'
miRNA:   3'- uuCGCGCGGa--------------GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 5253 0.68 0.588254
Target:  5'- gGGGCGCGCCgagucggccgCCGCGGcccCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGa---------GGCGUUucaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 5318 0.66 0.750363
Target:  5'- cGAGCGCGUCgUCCGCcGGGgCGcCGCc- -3'
miRNA:   3'- -UUCGCGCGG-AGGCGuUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 6360 0.67 0.680547
Target:  5'- cAGGCGCGCCgcCCGCcAGGgacgCGgGCa- -3'
miRNA:   3'- -UUCGCGCGGa-GGCGuUUCa---GCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 7455 0.69 0.567903
Target:  5'- -cGCcccuCGCCUCCGCGGGGacCGCGCg- -3'
miRNA:   3'- uuCGc---GCGGAGGCGUUUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 7869 0.67 0.690714
Target:  5'- uAGCgGCGCC-CCGCGc-GUCGCGUc- -3'
miRNA:   3'- uUCG-CGCGGaGGCGUuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 8596 0.67 0.700833
Target:  5'- uGGCGCGCCgcCCG-GAGGcCGCGCc- -3'
miRNA:   3'- uUCGCGCGGa-GGCgUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 9770 0.66 0.740629
Target:  5'- cGGCGCGCCggcggCCGCGcggguGUCcCGCg- -3'
miRNA:   3'- uUCGCGCGGa----GGCGUuu---CAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 11297 0.68 0.629281
Target:  5'- gAGGCGCGCCg-CGCGGGG-CGcCGCg- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 11494 0.69 0.578059
Target:  5'- -cGCuCGCCUCCGacgcGUCGCGCa- -3'
miRNA:   3'- uuCGcGCGGAGGCguuuCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 12108 0.7 0.521868
Target:  5'- -cGCGCGCCUCgCGCAGgaccagcgucccguuGGUcacguuccCGCGCUg -3'
miRNA:   3'- uuCGCGCGGAG-GCGUU---------------UCA--------GCGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.