miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 15450 0.69 0.547734
Target:  5'- -cGCGCGCCUUCGaCucGG-CGCGCa- -3'
miRNA:   3'- uuCGCGCGGAGGC-GuuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 17073 0.66 0.7308
Target:  5'- -uGCGCGCUgCCGCGAccAGUC-CGCc- -3'
miRNA:   3'- uuCGCGCGGaGGCGUU--UCAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 18850 0.66 0.739651
Target:  5'- -cGCGCGCCUCgGCccagcgggucccgGGGGUCG-GCg- -3'
miRNA:   3'- uuCGCGCGGAGgCG-------------UUUCAGCgCGaa -5'
21582 5' -58.9 NC_004812.1 + 20010 0.69 0.567903
Target:  5'- cGGCGcCGUCUCCGCGcgcGUCGCGg-- -3'
miRNA:   3'- uUCGC-GCGGAGGCGUuu-CAGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 20104 0.7 0.479249
Target:  5'- gGAGCGCGCCgCgCGCAgcGgCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaG-GCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20299 0.7 0.51793
Target:  5'- cGGCGCGCCggCGCAgcG-CGCGCg- -3'
miRNA:   3'- uUCGCGCGGagGCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20356 1.03 0.002878
Target:  5'- aAAGCGCGCCUCCGCAAAGUCGCGCUUg -3'
miRNA:   3'- -UUCGCGCGGAGGCGUUUCAGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 21158 0.67 0.680547
Target:  5'- cGGCGCGCagcUCGCGGAGgagGCGCUg -3'
miRNA:   3'- uUCGCGCGga-GGCGUUUCag-CGCGAa -5'
21582 5' -58.9 NC_004812.1 + 21879 0.71 0.424056
Target:  5'- cAGGCGCGCCUCCaGCuccccGAAGaacgucccgguUCGCGCa- -3'
miRNA:   3'- -UUCGCGCGGAGG-CG-----UUUC-----------AGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 23456 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 25863 0.7 0.498422
Target:  5'- cGGCGCGCCccgacggCCGCGAGGcCGaCGCc- -3'
miRNA:   3'- uUCGCGCGGa------GGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 26175 0.71 0.418747
Target:  5'- cAGCGcCGCCUCCGCGGgccgcagcgagcggcGG-CGCGCg- -3'
miRNA:   3'- uUCGC-GCGGAGGCGUU---------------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 26971 0.69 0.537734
Target:  5'- aGGGgGCGCC-CCGCGAAcucggCGCGCUc -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca---GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 27172 0.68 0.608732
Target:  5'- -cGCGCGCCgugCCGCc--GcCGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGuuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 27350 0.66 0.720885
Target:  5'- cGGCGcCGCCgcgCCGCugcuGG-CGCGCg- -3'
miRNA:   3'- uUCGC-GCGGa--GGCGuu--UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 28429 0.67 0.704864
Target:  5'- cAGGUGCGUCUCCGCcAGGcgccgacgcagcgcCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGAGGCGuUUCa-------------GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 28782 0.66 0.759992
Target:  5'- -uGCGCGCCuUCUGCGcg--CGCGCc- -3'
miRNA:   3'- uuCGCGCGG-AGGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 28917 0.69 0.541727
Target:  5'- uGGCGCGCCUCCgguucGCGGAaugccgcccggggacGUCGUGCc- -3'
miRNA:   3'- uUCGCGCGGAGG-----CGUUU---------------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 29358 0.68 0.619001
Target:  5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3'
miRNA:   3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 30852 0.66 0.759992
Target:  5'- gGGGCGCGCC-CgGCcauggggggccGAGGgggCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGaGgCG-----------UUUCa--GCGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.