miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 83725 0.66 0.577919
Target:  5'- gGGGUUucugCCGGggaCGCGGGCccgGCUGCcGCCAGg -3'
miRNA:   3'- -CUCAG----GGUC---GCGUCCG---CGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 102889 0.66 0.577919
Target:  5'- -cGUCCguGCGCGGG-GCggcggaccgGCGCCu- -3'
miRNA:   3'- cuCAGGguCGCGUCCgCGa--------CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 144506 0.66 0.558377
Target:  5'- uGGUCCU-GCGCgAGGCGC-GCGUgGGc -3'
miRNA:   3'- cUCAGGGuCGCG-UCCGCGaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 108554 0.66 0.587748
Target:  5'- cGAGUCgCuGCGCucgcugguGGCGC-GCGCCc- -3'
miRNA:   3'- -CUCAGgGuCGCGu-------CCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 155899 0.66 0.587748
Target:  5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3'
miRNA:   3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 73401 0.66 0.548675
Target:  5'- cGAGgccCCCgAGCGCGGcCGCcGCGCCu- -3'
miRNA:   3'- -CUCa--GGG-UCGCGUCcGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 5119 0.66 0.547707
Target:  5'- gGGGUCCgGgGgGCGGGCGCggagGCgggagggccgcggGCCAGa -3'
miRNA:   3'- -CUCAGGgU-CgCGUCCGCGa---CG-------------CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 99899 0.66 0.577919
Target:  5'- cGAGUCCCucgGGCGUGGGCaggagGCaGcCGCCGa -3'
miRNA:   3'- -CUCAGGG---UCGCGUCCG-----CGaC-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 123770 0.66 0.577919
Target:  5'- -cGUCCCccCGaCGGGCGgaGCGCCc- -3'
miRNA:   3'- cuCAGGGucGC-GUCCGCgaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 36371 0.66 0.587748
Target:  5'- uGGG-CgCAGCcgaagacggGCAGGgGCUGgGCCGGg -3'
miRNA:   3'- -CUCaGgGUCG---------CGUCCgCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98623 0.66 0.568127
Target:  5'- -cGUCgCGGCcgucGCGGccGCGCUGCGcCCGGg -3'
miRNA:   3'- cuCAGgGUCG----CGUC--CGCGACGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 98381 0.66 0.597607
Target:  5'- cGGGUCCUcgggcGGCGCGgcGGcCGCggggcgGCGCCGc -3'
miRNA:   3'- -CUCAGGG-----UCGCGU--CC-GCGa-----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 141208 0.66 0.577919
Target:  5'- -cGUUCCGGCggGCGGGgGCgaguacGUGCCGGu -3'
miRNA:   3'- cuCAGGGUCG--CGUCCgCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 117379 0.66 0.577919
Target:  5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 24506 0.66 0.548675
Target:  5'- gGGGcCCCcGCGCcgcGGGgGCUGCgGUCGGg -3'
miRNA:   3'- -CUCaGGGuCGCG---UCCgCGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 128932 0.66 0.568127
Target:  5'- uGGGcCCCGGCgGCA--CGCgGCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCG-CGUccGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98487 0.66 0.577919
Target:  5'- aGGGUCgUggguGGgGC-GGCGCgggGCGCCGGg -3'
miRNA:   3'- -CUCAGgG----UCgCGuCCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 48146 0.66 0.577919
Target:  5'- -cGUCCU--CG-AGGCGCgGCGCCGGg -3'
miRNA:   3'- cuCAGGGucGCgUCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 59656 0.66 0.548675
Target:  5'- uGGUgUgGGCGCAGGCGUgccGCGucuCCAGg -3'
miRNA:   3'- cUCAgGgUCGCGUCCGCGa--CGC---GGUC- -5'
21585 3' -62.7 NC_004812.1 + 110037 0.66 0.548675
Target:  5'- uAGUCCCcGgGCGGuGCGCgGCGacCCGGg -3'
miRNA:   3'- cUCAGGGuCgCGUC-CGCGaCGC--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.