miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 129032 0.66 0.558377
Target:  5'- cGGcCCCgGGgGCGGGgcCGCgGCGCCGGg -3'
miRNA:   3'- cUCaGGG-UCgCGUCC--GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 128932 0.66 0.568127
Target:  5'- uGGGcCCCGGCgGCA--CGCgGCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCG-CGUccGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 73401 0.66 0.548675
Target:  5'- cGAGgccCCCgAGCGCGGcCGCcGCGCCu- -3'
miRNA:   3'- -CUCa--GGG-UCGCGUCcGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 51001 0.66 0.558377
Target:  5'- cAGUCCCcuggaAGCGCAGauCGCcGCGCUGGu -3'
miRNA:   3'- cUCAGGG-----UCGCGUCc-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98731 0.66 0.558377
Target:  5'- -cGUUCUcGCGCGGGgGCaGCGCCc- -3'
miRNA:   3'- cuCAGGGuCGCGUCCgCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 74051 0.66 0.568127
Target:  5'- cGAGcCCCucgggcggcAGCgGCGGGCGC-GCGCgGGc -3'
miRNA:   3'- -CUCaGGG---------UCG-CGUCCGCGaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 152992 0.66 0.60749
Target:  5'- uGAG-CgCCGGgGCGGGC-CUGgGUCAGg -3'
miRNA:   3'- -CUCaG-GGUCgCGUCCGcGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 127507 0.66 0.558377
Target:  5'- cGGGUCCCgccggcGGuCGCucgGGGCGCcGaCGCCGGc -3'
miRNA:   3'- -CUCAGGG------UC-GCG---UCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98487 0.66 0.577919
Target:  5'- aGGGUCgUggguGGgGC-GGCGCgggGCGCCGGg -3'
miRNA:   3'- -CUCAGgG----UCgCGuCCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 59656 0.66 0.548675
Target:  5'- uGGUgUgGGCGCAGGCGUgccGCGucuCCAGg -3'
miRNA:   3'- cUCAgGgUCGCGUCCGCGa--CGC---GGUC- -5'
21585 3' -62.7 NC_004812.1 + 145930 0.66 0.577919
Target:  5'- -uGUaCCUGGUGacgugguuGGCGCUGCGCUGGg -3'
miRNA:   3'- cuCA-GGGUCGCgu------CCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 24506 0.66 0.548675
Target:  5'- gGGGcCCCcGCGCcgcGGGgGCUGCgGUCGGg -3'
miRNA:   3'- -CUCaGGGuCGCG---UCCgCGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 59581 0.66 0.572039
Target:  5'- uGGUCCCgaagacgccgaugggGGCGCGggcGGCGCUcGCGaaCCGGg -3'
miRNA:   3'- cUCAGGG---------------UCGCGU---CCGCGA-CGC--GGUC- -5'
21585 3' -62.7 NC_004812.1 + 117652 0.66 0.568127
Target:  5'- gGGGUCgcgggCCGGC-CGGGCGCcgggggGUGCCGGc -3'
miRNA:   3'- -CUCAG-----GGUCGcGUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 101218 0.66 0.548675
Target:  5'- cGGcCgCCAGCagGGGCGCcGCGCCGGc -3'
miRNA:   3'- cUCaG-GGUCGcgUCCGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 110037 0.66 0.548675
Target:  5'- uAGUCCCcGgGCGGuGCGCgGCGacCCGGg -3'
miRNA:   3'- cUCAGGGuCgCGUC-CGCGaCGC--GGUC- -5'
21585 3' -62.7 NC_004812.1 + 110505 0.66 0.548675
Target:  5'- cGAGgggCUgGcGUGCGGGCGcCUGCuGCCGGu -3'
miRNA:   3'- -CUCa--GGgU-CGCGUCCGC-GACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98623 0.66 0.568127
Target:  5'- -cGUCgCGGCcgucGCGGccGCGCUGCGcCCGGg -3'
miRNA:   3'- cuCAGgGUCG----CGUC--CGCGACGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 5119 0.66 0.547707
Target:  5'- gGGGUCCgGgGgGCGGGCGCggagGCgggagggccgcggGCCAGa -3'
miRNA:   3'- -CUCAGGgU-CgCGUCCGCGa---CG-------------CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 31397 0.66 0.576938
Target:  5'- -cGUUCUcgAGCaggaccgGCAGGCGCcGCGCCAc -3'
miRNA:   3'- cuCAGGG--UCG-------CGUCCGCGaCGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.