miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 20785 1.08 0.000664
Target:  5'- cGAGUCCCAGCGCAGGCGCUGCGCCAGg -3'
miRNA:   3'- -CUCAGGGUCGCGUCCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 46438 0.78 0.113622
Target:  5'- --cUCCCcugGGCGCuGGCGCUGgGCCAGg -3'
miRNA:   3'- cucAGGG---UCGCGuCCGCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 136303 0.77 0.125707
Target:  5'- cGGUgCCuGCGCGcGCGCUGCGCCGGc -3'
miRNA:   3'- cUCAgGGuCGCGUcCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 97554 0.76 0.157359
Target:  5'- cAGUUCCAGC-C-GGUGCUGCGCCGGc -3'
miRNA:   3'- cUCAGGGUCGcGuCCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 129345 0.75 0.173622
Target:  5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3'
miRNA:   3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3837 0.75 0.173622
Target:  5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3'
miRNA:   3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 41158 0.74 0.196045
Target:  5'- cGAG-CCCAGCGgcgcgccgcCAGGCGCUcucggcgccGCGCCGGu -3'
miRNA:   3'- -CUCaGGGUCGC---------GUCCGCGA---------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 145857 0.74 0.196045
Target:  5'- gGAGUCUC-GCGCAGGCGCgucGcCGCCGu -3'
miRNA:   3'- -CUCAGGGuCGCGUCCGCGa--C-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 19694 0.74 0.205702
Target:  5'- ---gUCCAGCGCGgcGGCGCgcgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCGCGU--CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 125224 0.74 0.205702
Target:  5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3'
miRNA:   3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5'
21585 3' -62.7 NC_004812.1 + 156125 0.74 0.205702
Target:  5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3'
miRNA:   3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5'
21585 3' -62.7 NC_004812.1 + 106507 0.73 0.220957
Target:  5'- cGGGUCCgCGGCGCgGGGCGCcgGCgGCCGc -3'
miRNA:   3'- -CUCAGG-GUCGCG-UCCGCGa-CG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 129236 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 72870 0.73 0.231655
Target:  5'- -----aCAGCGCGGGCaGCUGCGCCGc -3'
miRNA:   3'- cucaggGUCGCGUCCG-CGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 3728 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 137540 0.73 0.231655
Target:  5'- cGG-CCCGGCGCGGGC-CUGgGCCGc -3'
miRNA:   3'- cUCaGGGUCGCGUCCGcGACgCGGUc -5'
21585 3' -62.7 NC_004812.1 + 98673 0.73 0.241653
Target:  5'- gGGGUCgagCCGGgGCGGGCGCggucgaaccgccGCGCCGGg -3'
miRNA:   3'- -CUCAG---GGUCgCGUCCGCGa-----------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 51177 0.73 0.242786
Target:  5'- --uUCCCGacucGgGCGGGCGCggGCGCCGGg -3'
miRNA:   3'- cucAGGGU----CgCGUCCGCGa-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 78990 0.72 0.254359
Target:  5'- cGGUUUaCAGCGCcaAGGCGCUGCugGCCGGg -3'
miRNA:   3'- cUCAGG-GUCGCG--UCCGCGACG--CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 51519 0.72 0.254359
Target:  5'- aGGGUCCCgcccccGGCGCAgcGGCGCcgggGgGCCAGu -3'
miRNA:   3'- -CUCAGGG------UCGCGU--CCGCGa---CgCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.