miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 97961 0.7 0.340752
Target:  5'- gGGGUCCagGGCGCcgguccugGGGCGgUGgGCCGGg -3'
miRNA:   3'- -CUCAGGg-UCGCG--------UCCGCgACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 42016 0.72 0.266381
Target:  5'- cGGGUCgaUGGCGgGGGCGCgcgGCGCCAa -3'
miRNA:   3'- -CUCAGg-GUCGCgUCCGCGa--CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 122446 0.72 0.278223
Target:  5'- -cGUCUCcucgggcggcgggGGCGCGGGCGCcccuggcggGCGCCGGg -3'
miRNA:   3'- cuCAGGG-------------UCGCGUCCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 99378 0.71 0.298439
Target:  5'- cGAG-CCgCAGCGCcgugucGGCGCUGCGgCGGc -3'
miRNA:   3'- -CUCaGG-GUCGCGu-----CCGCGACGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 127871 0.71 0.298439
Target:  5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 7712 0.71 0.31907
Target:  5'- cGAGUCCgCGGCGgGGGUcuCcGCGCCGGg -3'
miRNA:   3'- -CUCAGG-GUCGCgUCCGc-GaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 130137 0.71 0.319775
Target:  5'- cGGGcgCCCacacgGGCGCGGGCGCgccggcggccucguaGCGCCGGc -3'
miRNA:   3'- -CUCa-GGG-----UCGCGUCCGCGa--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 12114 0.7 0.333408
Target:  5'- -cGUgUCCGGCGUcggggggguuggGGGCGCgcgGCGCCGGg -3'
miRNA:   3'- cuCA-GGGUCGCG------------UCCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 21152 0.7 0.338537
Target:  5'- -uGUCgCCGGCGCgcagcucgcggaggAGGCGCUGgGCgCGGa -3'
miRNA:   3'- cuCAG-GGUCGCG--------------UCCGCGACgCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 51519 0.72 0.254359
Target:  5'- aGGGUCCCgcccccGGCGCAgcGGCGCcgggGgGCCAGu -3'
miRNA:   3'- -CUCAGGG------UCGCGU--CCGCGa---CgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 51177 0.73 0.242786
Target:  5'- --uUCCCGacucGgGCGGGCGCggGCGCCGGg -3'
miRNA:   3'- cucAGGGU----CgCGUCCGCGa-CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98673 0.73 0.241653
Target:  5'- gGGGUCgagCCGGgGCGGGCGCggucgaaccgccGCGCCGGg -3'
miRNA:   3'- -CUCAG---GGUCgCGUCCGCGa-----------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 46438 0.78 0.113622
Target:  5'- --cUCCCcugGGCGCuGGCGCUGgGCCAGg -3'
miRNA:   3'- cucAGGG---UCGCGuCCGCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 129345 0.75 0.173622
Target:  5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3'
miRNA:   3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 145857 0.74 0.196045
Target:  5'- gGAGUCUC-GCGCAGGCGCgucGcCGCCGu -3'
miRNA:   3'- -CUCAGGGuCGCGUCCGCGa--C-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 125224 0.74 0.205702
Target:  5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3'
miRNA:   3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5'
21585 3' -62.7 NC_004812.1 + 19694 0.74 0.205702
Target:  5'- ---gUCCAGCGCGgcGGCGCgcgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCGCGU--CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 106507 0.73 0.220957
Target:  5'- cGGGUCCgCGGCGCgGGGCGCcgGCgGCCGc -3'
miRNA:   3'- -CUCAGG-GUCGCG-UCCGCGa-CG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 72870 0.73 0.231655
Target:  5'- -----aCAGCGCGGGCaGCUGCGCCGc -3'
miRNA:   3'- cucaggGUCGCGUCCG-CGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 129236 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.