miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 48 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 125 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 713 0.66 0.60749
Target:  5'- -cGUCggcgUCGGCGCcGGCGCgGuCGCCGGc -3'
miRNA:   3'- cuCAG----GGUCGCGuCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 1292 0.67 0.501062
Target:  5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3'
miRNA:   3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 1479 0.69 0.395383
Target:  5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3'
miRNA:   3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 1998 0.66 0.558377
Target:  5'- cGGGUCCCgccggcGGuCGCucgGGGCGCcGaCGCCGGc -3'
miRNA:   3'- -CUCAGGG------UC-GCG---UCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 2231 0.71 0.291796
Target:  5'- cGG-CCCAGCGCAcgcgcGGCGCgGCGgCGGg -3'
miRNA:   3'- cUCaGGGUCGCGU-----CCGCGaCGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 2363 0.71 0.298439
Target:  5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 2428 0.69 0.411998
Target:  5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3'
miRNA:   3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 3240 0.67 0.500127
Target:  5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3'
miRNA:   3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 3287 0.67 0.517062
Target:  5'- cGAGg-CCAGCGCGcgcgggucgaaggcGaGCGCggcGCGCCAGg -3'
miRNA:   3'- -CUCagGGUCGCGU--------------C-CGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3424 0.66 0.568127
Target:  5'- uGGGcCCCGGCgGCA--CGCgGCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCG-CGUccGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3524 0.66 0.558377
Target:  5'- cGGcCCCgGGgGCGGGgcCGCgGCGCCGGg -3'
miRNA:   3'- cUCaGGG-UCgCGUCC--GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3728 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3837 0.75 0.173622
Target:  5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3'
miRNA:   3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3893 0.67 0.519908
Target:  5'- cAG-CCagaGGCGCGGGCGCggcgGCGCg-- -3'
miRNA:   3'- cUCaGGg--UCGCGUCCGCGa---CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 4629 0.71 0.319775
Target:  5'- cGGGcgCCCacacgGGCGCGGGCGCgccggcggccucguaGCGCCGGc -3'
miRNA:   3'- -CUCa-GGG-----UCGCGUCCGCGa--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 4800 0.67 0.539025
Target:  5'- cGAGggCUGGUGCGGGCGCgGgGUCGGc -3'
miRNA:   3'- -CUCagGGUCGCGUCCGCGaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 5119 0.66 0.547707
Target:  5'- gGGGUCCgGgGgGCGGGCGCggagGCgggagggccgcggGCCAGa -3'
miRNA:   3'- -CUCAGGgU-CgCGUCCGCGa---CG-------------CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 5385 0.68 0.464322
Target:  5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3'
miRNA:   3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.