miRNA display CGI


Results 41 - 60 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 107205 0.66 0.577919
Target:  5'- cGGGgCCaCGGCGCGGGCcGCcuggGCGUCGa -3'
miRNA:   3'- -CUCaGG-GUCGCGUCCG-CGa---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 141208 0.66 0.577919
Target:  5'- -cGUUCCGGCggGCGGGgGCgaguacGUGCCGGu -3'
miRNA:   3'- cuCAGGGUCG--CGUCCgCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 99899 0.66 0.577919
Target:  5'- cGAGUCCCucgGGCGUGGGCaggagGCaGcCGCCGa -3'
miRNA:   3'- -CUCAGGG---UCGCGUCCG-----CGaC-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 47047 0.66 0.577919
Target:  5'- gGGGUUUgcGUGCGGGCGUccUGCGUCAGc -3'
miRNA:   3'- -CUCAGGguCGCGUCCGCG--ACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148280 0.66 0.577919
Target:  5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 134224 0.66 0.577919
Target:  5'- gGAGUuuuaCCCAGaCGCuggcGGCGCgcuuugccGCGUCAGg -3'
miRNA:   3'- -CUCA----GGGUC-GCGu---CCGCGa-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 83725 0.66 0.577919
Target:  5'- gGGGUUucugCCGGggaCGCGGGCccgGCUGCcGCCAGg -3'
miRNA:   3'- -CUCAG----GGUC---GCGUCCG---CGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 123770 0.66 0.577919
Target:  5'- -cGUCCCccCGaCGGGCGgaGCGCCc- -3'
miRNA:   3'- cuCAGGGucGC-GUCCGCgaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 98487 0.66 0.577919
Target:  5'- aGGGUCgUggguGGgGC-GGCGCgggGCGCCGGg -3'
miRNA:   3'- -CUCAGgG----UCgCGuCCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 31397 0.66 0.576938
Target:  5'- -cGUUCUcgAGCaggaccgGCAGGCGCcGCGCCAc -3'
miRNA:   3'- cuCAGGG--UCG-------CGUCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 86748 0.66 0.572039
Target:  5'- gGGGUCCgcgucggccauggcgCAGCggcgacGCGGGCGCgaggGCGaCCGGg -3'
miRNA:   3'- -CUCAGG---------------GUCG------CGUCCGCGa---CGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 59581 0.66 0.572039
Target:  5'- uGGUCCCgaagacgccgaugggGGCGCGggcGGCGCUcGCGaaCCGGg -3'
miRNA:   3'- cUCAGGG---------------UCGCGU---CCGCGA-CGC--GGUC- -5'
21585 3' -62.7 NC_004812.1 + 128932 0.66 0.568127
Target:  5'- uGGGcCCCGGCgGCA--CGCgGCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCG-CGUccGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 74051 0.66 0.568127
Target:  5'- cGAGcCCCucgggcggcAGCgGCGGGCGC-GCGCgGGc -3'
miRNA:   3'- -CUCaGGG---------UCG-CGUCCGCGaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 3424 0.66 0.568127
Target:  5'- uGGGcCCCGGCgGCA--CGCgGCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCG-CGUccGCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 120926 0.66 0.568127
Target:  5'- aAGgCCCGGCGCc-GCGCacgcgGCGCCAc -3'
miRNA:   3'- cUCaGGGUCGCGucCGCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 82388 0.66 0.568127
Target:  5'- gGAGaCCCGGgGCcccuGGaGCUGCGCgAGg -3'
miRNA:   3'- -CUCaGGGUCgCGu---CCgCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 55957 0.66 0.568127
Target:  5'- cGAGgCCCGGC-CcGGCGCggcucGCGCCGc -3'
miRNA:   3'- -CUCaGGGUCGcGuCCGCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 148553 0.66 0.568127
Target:  5'- gGGGUCgcgggCCGGC-CGGGCGCcgggggGUGCCGGc -3'
miRNA:   3'- -CUCAG-----GGUCGcGUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 47268 0.66 0.568127
Target:  5'- cGAGUCUaCGGCGCcccgguaGCGCgGCGCCGc -3'
miRNA:   3'- -CUCAGG-GUCGCGuc-----CGCGaCGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.