miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 6908 0.69 0.411998
Target:  5'- uGGUCUCGGgGC--GCGCUGCGCCc- -3'
miRNA:   3'- cUCAGGGUCgCGucCGCGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 7712 0.71 0.31907
Target:  5'- cGAGUCCgCGGCGgGGGUcuCcGCGCCGGg -3'
miRNA:   3'- -CUCAGG-GUCGCgUCCGc-GaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 7957 0.67 0.495467
Target:  5'- -cGUCCgGggggggccgagagacGCGgAGGCGCgcggGCGCCGGu -3'
miRNA:   3'- cuCAGGgU---------------CGCgUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 11614 0.67 0.491752
Target:  5'- aGGGUCCguagCGGCGCacggccAGGCGCUcCGuCCAGa -3'
miRNA:   3'- -CUCAGG----GUCGCG------UCCGCGAcGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 12114 0.7 0.333408
Target:  5'- -cGUgUCCGGCGUcggggggguuggGGGCGCgcgGCGCCGGg -3'
miRNA:   3'- cuCA-GGGUCGCG------------UCCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 13494 0.67 0.491752
Target:  5'- -cGUCCguCAGCGcCAGGCGCgGgGCCc- -3'
miRNA:   3'- cuCAGG--GUCGC-GUCCGCGaCgCGGuc -5'
21585 3' -62.7 NC_004812.1 + 16161 0.69 0.429038
Target:  5'- cGAGcUCCGGCGCgcccgacuggGGGCGCUcgauCGCCAGc -3'
miRNA:   3'- -CUCaGGGUCGCG----------UCCGCGAc---GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 18718 0.69 0.411998
Target:  5'- uAGcUCCgCGGCGCugGGGCGCcgcGCGCCAu -3'
miRNA:   3'- cUC-AGG-GUCGCG--UCCGCGa--CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 19530 0.67 0.510448
Target:  5'- cGAG-CCCGGCGUcaGGGCGCgGUGgaucgcgaagcCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCG--UCCGCGaCGC-----------GGUC- -5'
21585 3' -62.7 NC_004812.1 + 19694 0.74 0.205702
Target:  5'- ---gUCCAGCGCGgcGGCGCgcgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCGCGU--CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 19757 0.68 0.464322
Target:  5'- cAG-CCCGGUGCGGGggucccaggcgaCGC-GCGCCGGg -3'
miRNA:   3'- cUCaGGGUCGCGUCC------------GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 20785 1.08 0.000664
Target:  5'- cGAGUCCCAGCGCAGGCGCUGCGCCAGg -3'
miRNA:   3'- -CUCAGGGUCGCGUCCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 21152 0.7 0.338537
Target:  5'- -uGUCgCCGGCGCgcagcucgcggaggAGGCGCUGgGCgCGGa -3'
miRNA:   3'- cuCAG-GGUCGCG--------------UCCGCGACgCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 21158 0.69 0.417914
Target:  5'- gGGGUCUCGGCGUgccgcgggacgccgAGGCGC-GCGUCGu -3'
miRNA:   3'- -CUCAGGGUCGCG--------------UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 22296 0.67 0.539025
Target:  5'- aGGGUgaCCCucuGGCGgGGGgGCcucgGCGCCGGg -3'
miRNA:   3'- -CUCA--GGG---UCGCgUCCgCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 23400 0.67 0.491752
Target:  5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3'
miRNA:   3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 23493 0.67 0.501062
Target:  5'- aGGGUgUgCGGCGggcCGGGCGCggcgGCGCCGGc -3'
miRNA:   3'- -CUCA-GgGUCGC---GUCCGCGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 24506 0.66 0.548675
Target:  5'- gGGGcCCCcGCGCcgcGGGgGCUGCgGUCGGg -3'
miRNA:   3'- -CUCaGGGuCGCG---UCCgCGACG-CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 25908 0.68 0.446486
Target:  5'- ---gCCCAGCGCcgcGGGCGC-GCGUCGc -3'
miRNA:   3'- cucaGGGUCGCG---UCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 27344 0.69 0.388049
Target:  5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3'
miRNA:   3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.