miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 5' -59.1 NC_004812.1 + 129706 0.67 0.748817
Target:  5'- cGGCgGGAACGGcggggaCCGCggcggcgucggGCCGGGGg -3'
miRNA:   3'- -UCGgCCUUGUCaag---GGUG-----------UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 102448 0.67 0.748817
Target:  5'- cGCgGGcGCGGUacgugUCCCGcCGCCGGGa- -3'
miRNA:   3'- uCGgCCuUGUCA-----AGGGU-GUGGCCCca -5'
21585 5' -59.1 NC_004812.1 + 70890 0.67 0.748817
Target:  5'- gGGCgGGGaggggGCGGggaUCUCGCGCgGGGGg -3'
miRNA:   3'- -UCGgCCU-----UGUCa--AGGGUGUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 8837 0.67 0.739327
Target:  5'- gAGCuacuaCGGggUuGUUCCCGgGCgGGGGg -3'
miRNA:   3'- -UCG-----GCCuuGuCAAGGGUgUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 59602 0.67 0.739327
Target:  5'- gGGCgCGG-GCGGcgCUCGCgaACCGGGGg -3'
miRNA:   3'- -UCG-GCCuUGUCaaGGGUG--UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 40758 0.67 0.739327
Target:  5'- cGCgGGAGCcccgagcggGGUUCCCcugGCACCggacGGGGg -3'
miRNA:   3'- uCGgCCUUG---------UCAAGGG---UGUGG----CCCCa -5'
21585 5' -59.1 NC_004812.1 + 127619 0.67 0.739327
Target:  5'- gGGCCGcGcuccCAGUcccagUCCCAguCCGGGGa -3'
miRNA:   3'- -UCGGC-Cuu--GUCA-----AGGGUguGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 2110 0.67 0.739327
Target:  5'- gGGCCGcGcuccCAGUcccagUCCCAguCCGGGGa -3'
miRNA:   3'- -UCGGC-Cuu--GUCA-----AGGGUguGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 39738 0.67 0.739327
Target:  5'- gAGCuacuaCGGggUuGUUCCCGgGCgGGGGg -3'
miRNA:   3'- -UCG-----GCCuuGuCAAGGGUgUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 93464 0.67 0.739327
Target:  5'- aGGCCGcGGCGGcUCCCcCucccCCGGGGg -3'
miRNA:   3'- -UCGGCcUUGUCaAGGGuGu---GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 15958 0.67 0.729746
Target:  5'- cGGCCGGGcgACGGacgcCCCGCGgCCGGcGGc -3'
miRNA:   3'- -UCGGCCU--UGUCaa--GGGUGU-GGCC-CCa -5'
21585 5' -59.1 NC_004812.1 + 5930 0.67 0.729746
Target:  5'- -cCCGGGGCAGgccCCCGgGCacaGGGGg -3'
miRNA:   3'- ucGGCCUUGUCaa-GGGUgUGg--CCCCa -5'
21585 5' -59.1 NC_004812.1 + 121243 0.67 0.729746
Target:  5'- aGGCCGuGGGCGGggu---CGCCGGGGUa -3'
miRNA:   3'- -UCGGC-CUUGUCaaggguGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 152144 0.67 0.729746
Target:  5'- aGGCCGuGGGCGGggu---CGCCGGGGUa -3'
miRNA:   3'- -UCGGC-CUUGUCaaggguGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 13419 0.67 0.729746
Target:  5'- cGGCCGGAGgGGUggCCguCGuuUCGGGGg -3'
miRNA:   3'- -UCGGCCUUgUCAa-GGguGU--GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 36831 0.67 0.729746
Target:  5'- -cCCGGGGCAGgccCCCGgGCacaGGGGg -3'
miRNA:   3'- ucGGCCUUGUCaa-GGGUgUGg--CCCCa -5'
21585 5' -59.1 NC_004812.1 + 17003 0.67 0.729746
Target:  5'- gGGCgCGGAGuCAGagCCUcgaGCCGGGGg -3'
miRNA:   3'- -UCG-GCCUU-GUCaaGGGug-UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 91141 0.67 0.729746
Target:  5'- gGGCCGGucgggGACGGgcggUCCgGgGgCCGGGGg -3'
miRNA:   3'- -UCGGCC-----UUGUCa---AGGgUgU-GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 154724 0.67 0.729746
Target:  5'- uGCCGcGGGCGGggCCCggGCGCCcGGGc -3'
miRNA:   3'- uCGGC-CUUGUCaaGGG--UGUGGcCCCa -5'
21585 5' -59.1 NC_004812.1 + 78288 0.67 0.729746
Target:  5'- -aUCGaGAACGGggCCCGCacgcacGCCGGGGc -3'
miRNA:   3'- ucGGC-CUUGUCaaGGGUG------UGGCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.