Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21602 | 5' | -53.4 | NC_004812.1 | + | 73639 | 0.72 | 0.784296 |
Target: 5'- -cGCcGCGggGAGCGUGAGGUgCAUGUa -3' miRNA: 3'- ccCGaCGCa-CUCGCACUUCAaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 155548 | 0.71 | 0.802605 |
Target: 5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3' miRNA: 3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 30039 | 0.71 | 0.802605 |
Target: 5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3' miRNA: 3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 103213 | 0.71 | 0.820286 |
Target: 5'- -cGCUGCGgacGAGCG-GcAGGUUCAgGCg -3' miRNA: 3'- ccCGACGCa--CUCGCaC-UUCAAGUgCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 78175 | 0.71 | 0.820286 |
Target: 5'- cGGGCUGgaUGAGCGgGAGGU--GCGCc -3' miRNA: 3'- -CCCGACgcACUCGCaCUUCAagUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 17771 | 0.71 | 0.828868 |
Target: 5'- uGGGCggGCGUGggGGCGagaacGggGUgggugCGCGCa -3' miRNA: 3'- -CCCGa-CGCAC--UCGCa----CuuCAa----GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 100457 | 0.71 | 0.828868 |
Target: 5'- aGGGCgugGUGcGGGCGUaGAGGggCGCGg -3' miRNA: 3'- -CCCGa--CGCaCUCGCA-CUUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 145807 | 0.71 | 0.828868 |
Target: 5'- cGGGCUcgGUGUGGGCGgcGggGUcggcggccCACGCc -3' miRNA: 3'- -CCCGA--CGCACUCGCa-CuuCAa-------GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 44948 | 0.7 | 0.837267 |
Target: 5'- cGGGgaGCGguacacGAGCGccGAGGgggCGCGCa -3' miRNA: 3'- -CCCgaCGCa-----CUCGCa-CUUCaa-GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 106774 | 0.7 | 0.837267 |
Target: 5'- gGGGCgGCGUcGGGCGgggcgcgcggGAGGgggccUCGCGCc -3' miRNA: 3'- -CCCGaCGCA-CUCGCa---------CUUCa----AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 35226 | 0.7 | 0.845477 |
Target: 5'- gGGGCgGUGUu-GCG-GAGGUUCGCGg -3' miRNA: 3'- -CCCGaCGCAcuCGCaCUUCAAGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 36704 | 0.7 | 0.861295 |
Target: 5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3' miRNA: 3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 96732 | 0.7 | 0.861295 |
Target: 5'- aGGGCUcGcCGUGGGCGUcGgcGUcUACGUg -3' miRNA: 3'- -CCCGA-C-GCACUCGCA-CuuCAaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 5803 | 0.7 | 0.861295 |
Target: 5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3' miRNA: 3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 146757 | 0.7 | 0.866634 |
Target: 5'- cGGGCggacggucgGCGUGAGCGUcgucgaggcccaacGAGGgcCGCGa -3' miRNA: 3'- -CCCGa--------CGCACUCGCA--------------CUUCaaGUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 70876 | 0.7 | 0.86889 |
Target: 5'- uGGCUGCGcgggggGGGCGggGAGGgggcggggaucUCGCGCg -3' miRNA: 3'- cCCGACGCa-----CUCGCa-CUUCa----------AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 119689 | 0.69 | 0.890354 |
Target: 5'- gGGGCUGCGgGAGC-UGg----CGCGCa -3' miRNA: 3'- -CCCGACGCaCUCGcACuucaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 41028 | 0.69 | 0.89705 |
Target: 5'- cGGGUcGcCGUGGGgGUGggGUg-GCGUa -3' miRNA: 3'- -CCCGaC-GCACUCgCACuuCAagUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 12233 | 0.69 | 0.903511 |
Target: 5'- uGGcGCUcGCGcaGGGgGuUGAGGUUCAUGCg -3' miRNA: 3'- -CC-CGA-CGCa-CUCgC-ACUUCAAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 124323 | 0.69 | 0.903511 |
Target: 5'- gGGGCgcgGCGcgGGGCG-GGccgUCGCGCa -3' miRNA: 3'- -CCCGa--CGCa-CUCGCaCUucaAGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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