Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21602 | 5' | -53.4 | NC_004812.1 | + | 43767 | 0.67 | 0.958648 |
Target: 5'- -aGC-GCGUGAGCGccGAGgcCACGCc -3' miRNA: 3'- ccCGaCGCACUCGCacUUCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 100897 | 0.67 | 0.958648 |
Target: 5'- cGGGgUGCGccGAGCGc-GGGUgcaggCGCGCg -3' miRNA: 3'- -CCCgACGCa-CUCGCacUUCAa----GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 89132 | 0.67 | 0.958648 |
Target: 5'- cGGGCgccagcccGCG-GAcGCGUGggGa-CACGCc -3' miRNA: 3'- -CCCGa-------CGCaCU-CGCACuuCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 142649 | 0.67 | 0.958648 |
Target: 5'- cGGGCUGCGccccguguUGGucuGCGUGGGcucgccCACGCa -3' miRNA: 3'- -CCCGACGC--------ACU---CGCACUUcaa---GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 105137 | 0.67 | 0.956385 |
Target: 5'- aGGGCUGCGguccgggaacgaggGGGaCGUuggcGggGgUCGCGUg -3' miRNA: 3'- -CCCGACGCa-------------CUC-GCA----CuuCaAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 120886 | 0.67 | 0.954831 |
Target: 5'- gGGGCgggGCG-GAGaCGcGggGgUCGCGUc -3' miRNA: 3'- -CCCGa--CGCaCUC-GCaCuuCaAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 153340 | 0.67 | 0.954831 |
Target: 5'- cGGGCgGCGUcuccucGGGCGgcgGggGcgCGgGCg -3' miRNA: 3'- -CCCGaCGCA------CUCGCa--CuuCaaGUgCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 83065 | 0.67 | 0.954831 |
Target: 5'- aGGGCUcGCGUcAGCGgggUGAGcgUCGCGUc -3' miRNA: 3'- -CCCGA-CGCAcUCGC---ACUUcaAGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 109021 | 0.67 | 0.954831 |
Target: 5'- cGGCUGCcUGcGCGUGucggaucgcGAGUucaUCACGUa -3' miRNA: 3'- cCCGACGcACuCGCAC---------UUCA---AGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 122439 | 0.67 | 0.954831 |
Target: 5'- cGGGCgGCGUcuccucGGGCGgcgGggGcgCGgGCg -3' miRNA: 3'- -CCCGaCGCA------CUCGCa--CuuCaaGUgCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 60921 | 0.67 | 0.954831 |
Target: 5'- cGGGCUgaagugggacgGCGUGAGCuUGAGGgagACGg -3' miRNA: 3'- -CCCGA-----------CGCACUCGcACUUCaagUGCg -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 125281 | 0.67 | 0.950781 |
Target: 5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3' miRNA: 3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 7922 | 0.67 | 0.950781 |
Target: 5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3' miRNA: 3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 18817 | 0.67 | 0.950781 |
Target: 5'- gGGGCggGUGUGcGGCGggcgGcGGUUgCGCGCc -3' miRNA: 3'- -CCCGa-CGCAC-UCGCa---CuUCAA-GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 38823 | 0.67 | 0.950781 |
Target: 5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3' miRNA: 3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 156182 | 0.67 | 0.950781 |
Target: 5'- cGGGCgcgcGCGaGAGCGccgcgcgcgGAAGgccugCGCGCg -3' miRNA: 3'- -CCCGa---CGCaCUCGCa--------CUUCaa---GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 127909 | 0.67 | 0.946496 |
Target: 5'- gGGGCgGCGgucGCGaaauccagGAAGggCACGCg -3' miRNA: 3'- -CCCGaCGCacuCGCa-------CUUCaaGUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 153633 | 0.67 | 0.946055 |
Target: 5'- cGGGCcggcccaUGCGggcGGGCGgGGAGagggCGCGCa -3' miRNA: 3'- -CCCG-------ACGCa--CUCGCaCUUCaa--GUGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 147896 | 0.67 | 0.941973 |
Target: 5'- gGGGCUcGCGagggGGGCGcgGAGGgcgUCcCGCc -3' miRNA: 3'- -CCCGA-CGCa---CUCGCa-CUUCa--AGuGCG- -5' |
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21602 | 5' | -53.4 | NC_004812.1 | + | 127556 | 0.67 | 0.941973 |
Target: 5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3' miRNA: 3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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