miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 30112 0.66 0.965606
Target:  5'- gGGGCUGCG-GGGCGcacg--UCcCGCa -3'
miRNA:   3'- -CCCGACGCaCUCGCacuucaAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 30213 0.72 0.774927
Target:  5'- aGGGggGUG-GGGgGUGggGggCGCGCg -3'
miRNA:   3'- -CCCgaCGCaCUCgCACuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 30442 0.66 0.976969
Target:  5'- cGGGgUGCGaaccugGGGCG-GAAGg--ACGCa -3'
miRNA:   3'- -CCCgACGCa-----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 35226 0.7 0.845477
Target:  5'- gGGGCgGUGUu-GCG-GAGGUUCGCGg -3'
miRNA:   3'- -CCCGaCGCAcuCGCaCUUCAAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 35703 0.74 0.665349
Target:  5'- aGGGCUgGUGcGGGCGcGggGUcggCACGCg -3'
miRNA:   3'- -CCCGA-CGCaCUCGCaCuuCAa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 36591 1.13 0.002985
Target:  5'- gGGGCUGCGUGAGCGUGAAGUUCACGCc -3'
miRNA:   3'- -CCCGACGCACUCGCACUUCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 36704 0.7 0.861295
Target:  5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3'
miRNA:   3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 38566 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 38823 0.67 0.950781
Target:  5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3'
miRNA:   3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 40083 0.66 0.971696
Target:  5'- cGGGCgGCGggcggcGGGCG-GccGggCGCGCg -3'
miRNA:   3'- -CCCGaCGCa-----CUCGCaCuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 40566 0.75 0.603376
Target:  5'- cGGGCUGUGUGuGCGUcgGGAG---GCGCg -3'
miRNA:   3'- -CCCGACGCACuCGCA--CUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 41028 0.69 0.89705
Target:  5'- cGGGUcGcCGUGGGgGUGggGUg-GCGUa -3'
miRNA:   3'- -CCCGaC-GCACUCgCACuuCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 43064 0.68 0.932201
Target:  5'- gGGGgUGCGgGGGCGgugGggGUgcggggacgaACGCa -3'
miRNA:   3'- -CCCgACGCaCUCGCa--CuuCAag--------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 43767 0.67 0.958648
Target:  5'- -aGC-GCGUGAGCGccGAGgcCACGCc -3'
miRNA:   3'- ccCGaCGCACUCGCacUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 44948 0.7 0.837267
Target:  5'- cGGGgaGCGguacacGAGCGccGAGGgggCGCGCa -3'
miRNA:   3'- -CCCgaCGCa-----CUCGCa-CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 46008 0.66 0.965606
Target:  5'- cGGGCgggGCGUGGaaGUGAaaccgccgcgGGUcCGCGUg -3'
miRNA:   3'- -CCCGa--CGCACUcgCACU----------UCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 50290 0.66 0.971411
Target:  5'- cGGGuCUGCGcggGGGCGagGAcgacggccuggauGGUUC-CGCg -3'
miRNA:   3'- -CCC-GACGCa--CUCGCa-CU-------------UCAAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 53771 0.68 0.915716
Target:  5'- aGGUUGCGcGucgccGGCGUGGAGg-CGCGCc -3'
miRNA:   3'- cCCGACGCaC-----UCGCACUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 54933 0.67 0.962238
Target:  5'- cGGGCaGuCG-GAGUcguacGUGAGGUaCACGCc -3'
miRNA:   3'- -CCCGaC-GCaCUCG-----CACUUCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 60921 0.67 0.954831
Target:  5'- cGGGCUgaagugggacgGCGUGAGCuUGAGGgagACGg -3'
miRNA:   3'- -CCCGA-----------CGCACUCGcACUUCaagUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.