miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 18 0.67 0.961889
Target:  5'- gGGGCgcgcGCGUuuucgggGGGCG-GggGUUCguucggggggGCGCg -3'
miRNA:   3'- -CCCGa---CGCA-------CUCGCaCuuCAAG----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 2047 0.67 0.941973
Target:  5'- cGGCgGCGggGGGCGcggggGAGGgggCGCGCc -3'
miRNA:   3'- cCCGaCGCa-CUCGCa----CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 4802 0.74 0.665349
Target:  5'- aGGGCUgGUGcGGGCGcGggGUcggCACGCg -3'
miRNA:   3'- -CCCGA-CGCaCUCGCaCuuCAa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 5803 0.7 0.861295
Target:  5'- cGGGCUGCG-GGGC-UGcGGggCGCGg -3'
miRNA:   3'- -CCCGACGCaCUCGcACuUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 7665 0.69 0.906029
Target:  5'- cGGGCccGCGggccggGAGCG-GggGUgggcgggcgcgggggUCGCGCc -3'
miRNA:   3'- -CCCGa-CGCa-----CUCGCaCuuCA---------------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 7922 0.67 0.950781
Target:  5'- gGGGCUGCGgcgcgcgccgGcGCGgccGggGggCGCGUc -3'
miRNA:   3'- -CCCGACGCa---------CuCGCa--CuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 10121 0.66 0.976969
Target:  5'- cGGCcugGCGUucAGCGUGAGGcccggUACGCc -3'
miRNA:   3'- cCCGa--CGCAc-UCGCACUUCaa---GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 12233 0.69 0.903511
Target:  5'- uGGcGCUcGCGcaGGGgGuUGAGGUUCAUGCg -3'
miRNA:   3'- -CC-CGA-CGCa-CUCgC-ACUUCAAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 13940 0.69 0.909734
Target:  5'- cGGuCUGCGUGGGCG---AGccCACGCa -3'
miRNA:   3'- cCC-GACGCACUCGCacuUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 15919 0.68 0.936719
Target:  5'- cGGCggGCG-GGG-GUGggGUcgcggggUCACGCg -3'
miRNA:   3'- cCCGa-CGCaCUCgCACuuCA-------AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 17771 0.71 0.828868
Target:  5'- uGGGCggGCGUGggGGCGagaacGggGUgggugCGCGCa -3'
miRNA:   3'- -CCCGa-CGCAC--UCGCa----CuuCAa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 18817 0.67 0.950781
Target:  5'- gGGGCggGUGUGcGGCGggcgGcGGUUgCGCGCc -3'
miRNA:   3'- -CCCGa-CGCAC-UCGCa---CuUCAA-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 21066 0.66 0.976969
Target:  5'- cGGGCUGaCGUcgGGGCG-GAGGUacuucucCACGa -3'
miRNA:   3'- -CCCGAC-GCA--CUCGCaCUUCAa------GUGCg -5'
21602 5' -53.4 NC_004812.1 + 22920 0.73 0.726316
Target:  5'- cGGGg-GCG-GAGCGUGggG-UCGCGg -3'
miRNA:   3'- -CCCgaCGCaCUCGCACuuCaAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 23331 0.72 0.754839
Target:  5'- aGGGgUGCGcgGGGCucaccucgucgggGUGggGUUCGCGa -3'
miRNA:   3'- -CCCgACGCa-CUCG-------------CACuuCAAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 24867 0.72 0.746076
Target:  5'- cGGCUGCGgGGGCGUccucGAGGcgCAgGCu -3'
miRNA:   3'- cCCGACGCaCUCGCA----CUUCaaGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 26692 0.72 0.784296
Target:  5'- gGGGCUGCGUaGGCGgcgacgGAuc--CACGCa -3'
miRNA:   3'- -CCCGACGCAcUCGCa-----CUucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 27228 0.67 0.962238
Target:  5'- uGGCUGCGcGAGC-UGcgccgCACGCg -3'
miRNA:   3'- cCCGACGCaCUCGcACuucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 27807 0.66 0.968757
Target:  5'- gGGGCcgGgGgggGAGCG-GggGUUCgACGg -3'
miRNA:   3'- -CCCGa-CgCa--CUCGCaCuuCAAG-UGCg -5'
21602 5' -53.4 NC_004812.1 + 30039 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.