miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 35226 0.7 0.845477
Target:  5'- gGGGCgGUGUu-GCG-GAGGUUCGCGg -3'
miRNA:   3'- -CCCGaCGCAcuCGCaCUUCAAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 26692 0.72 0.784296
Target:  5'- gGGGCUGCGUaGGCGgcgacgGAuc--CACGCa -3'
miRNA:   3'- -CCCGACGCAcUCGCa-----CUucaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 73639 0.72 0.784296
Target:  5'- -cGCcGCGggGAGCGUGAGGUgCAUGUa -3'
miRNA:   3'- ccCGaCGCa-CUCGCACUUCAaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155548 0.71 0.802605
Target:  5'- aGGGCgggagggGCGgggGAGgGggGAGGggCGCGCg -3'
miRNA:   3'- -CCCGa------CGCa--CUCgCa-CUUCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 78175 0.71 0.820286
Target:  5'- cGGGCUGgaUGAGCGgGAGGU--GCGCc -3'
miRNA:   3'- -CCCGACgcACUCGCaCUUCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 103213 0.71 0.820286
Target:  5'- -cGCUGCGgacGAGCG-GcAGGUUCAgGCg -3'
miRNA:   3'- ccCGACGCa--CUCGCaC-UUCAAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 17771 0.71 0.828868
Target:  5'- uGGGCggGCGUGggGGCGagaacGggGUgggugCGCGCa -3'
miRNA:   3'- -CCCGa-CGCAC--UCGCa----CuuCAa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 100457 0.71 0.828868
Target:  5'- aGGGCgugGUGcGGGCGUaGAGGggCGCGg -3'
miRNA:   3'- -CCCGa--CGCaCUCGCA-CUUCaaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 44948 0.7 0.837267
Target:  5'- cGGGgaGCGguacacGAGCGccGAGGgggCGCGCa -3'
miRNA:   3'- -CCCgaCGCa-----CUCGCa-CUUCaa-GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 109741 0.72 0.774927
Target:  5'- gGGGCUGCGacUGA-CGUGgcGcgugCACGCg -3'
miRNA:   3'- -CCCGACGC--ACUcGCACuuCaa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155721 0.72 0.774927
Target:  5'- aGGGggGUG-GGGgGUGggGggCGCGCg -3'
miRNA:   3'- -CCCgaCGCaCUCgCACuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 148839 0.72 0.754839
Target:  5'- aGGGgUGCGcgGGGCucaccucgucgggGUGggGUUCGCGa -3'
miRNA:   3'- -CCCgACGCa-CUCG-------------CACuuCAAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 93122 0.76 0.562386
Target:  5'- cGGGCggcgGCGUcuGCGUGAcGUUCGuCGCg -3'
miRNA:   3'- -CCCGa---CGCAcuCGCACUuCAAGU-GCG- -5'
21602 5' -53.4 NC_004812.1 + 40566 0.75 0.603376
Target:  5'- cGGGCUGUGUGuGCGUcgGGAG---GCGCg -3'
miRNA:   3'- -CCCGACGCACuCGCA--CUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 4802 0.74 0.665349
Target:  5'- aGGGCUgGUGcGGGCGcGggGUcggCACGCg -3'
miRNA:   3'- -CCCGA-CGCaCUCGCaCuuCAa--GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 107184 0.73 0.696079
Target:  5'- cGGGCgaGCG-GAGCGUGgcGgUCGgGCg -3'
miRNA:   3'- -CCCGa-CGCaCUCGCACuuCaAGUgCG- -5'
21602 5' -53.4 NC_004812.1 + 146645 0.73 0.716308
Target:  5'- gGGGUUGUGUGGGUGggGAGGggaGCGUu -3'
miRNA:   3'- -CCCGACGCACUCGCa-CUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 148428 0.73 0.726316
Target:  5'- cGGGg-GCG-GAGCGUGggG-UCGCGg -3'
miRNA:   3'- -CCCgaCGCaCUCGCACuuCaAGUGCg -5'
21602 5' -53.4 NC_004812.1 + 143932 0.72 0.743136
Target:  5'- uGGGUUGCGUGGGagGUGggGgcggggugggaggaGCGCg -3'
miRNA:   3'- -CCCGACGCACUCg-CACuuCaag-----------UGCG- -5'
21602 5' -53.4 NC_004812.1 + 24867 0.72 0.746076
Target:  5'- cGGCUGCGgGGGCGUccucGAGGcgCAgGCu -3'
miRNA:   3'- cCCGACGCaCUCGCA----CUUCaaGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.