miRNA display CGI

Results 21 - 40 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	37457	0.66	0.585863
	Target:  5'- gCGUGGuccagUCCGCGGgGCGguACGGCCGgUCg -3' miRNA:   3'- -GCGCU-----GGGUGUCgCGC--UGCCGGCgGG- -5'
21606	5'	-63.5	NC_004812.1	+	45189	0.66	0.595413
	Target:  5'- uGCGucACCCaggcccgggagcGCAGCaGCG-CGGCCGCg- -3' miRNA:   3'- gCGC--UGGG------------UGUCG-CGCuGCCGGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	94294	0.66	0.595413
	Target:  5'- gGCGuGCgCCugGGUGCGcuUGGUCGCCg -3' miRNA:   3'- gCGC-UG-GGugUCGCGCu-GCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	49837	0.66	0.585863
	Target:  5'- gCGCGcCCCGCuc--CGAC-GCCGCCCc -3' miRNA:   3'- -GCGCuGGGUGucgcGCUGcCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	107303	0.66	0.595413
	Target:  5'- gCGgGGCCUugGgGCGUuccgggggGGCGGCCGCg- -3' miRNA:   3'- -GCgCUGGGugU-CGCG--------CUGCCGGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	50069	0.66	0.585863
	Target:  5'- cCGCG-CCCGCugcgagguggGGCGCGugcUGGCCGUg- -3' miRNA:   3'- -GCGCuGGGUG----------UCGCGCu--GCCGGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	126437	0.66	0.585863
	Target:  5'- gCGCGccgaGCCCGCcGCGCGcuccCGGCUguggagGCCUa -3' miRNA:   3'- -GCGC----UGGGUGuCGCGCu---GCCGG------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	19425	0.66	0.595413
	Target:  5'- gCGUGGCCgCGCGGcCGCa--GGaCCGCCUc -3' miRNA:   3'- -GCGCUGG-GUGUC-GCGcugCC-GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	130644	0.66	0.585863
	Target:  5'- gGCcGCCCggggACGGCgGCGuCGGCCcgcgguccggGCCCg -3' miRNA:   3'- gCGcUGGG----UGUCG-CGCuGCCGG----------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	151810	0.66	0.585863
	Target:  5'- gGCGccuucuacGCCCGCuacCGCGACGGguaCGCCa -3' miRNA:   3'- gCGC--------UGGGUGuc-GCGCUGCCg--GCGGg -5'
21606	5'	-63.5	NC_004812.1	+	32134	0.66	0.595413
	Target:  5'- gGCcgGACgCCACGGCcgggcccccgccGCGGCgGGgCGCCCc -3' miRNA:   3'- gCG--CUG-GGUGUCG------------CGCUG-CCgGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	61927	0.66	0.594457
	Target:  5'- uCGCcccACCCACGcaccCGCGucgauaaaaaccaACGGCCGCCg -3' miRNA:   3'- -GCGc--UGGGUGUc---GCGC-------------UGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	95589	0.66	0.59637
	Target:  5'- cCGCG-CCCGCgcgcgGGCGCGGCagcagcaacggcaccGGgccgggcuccaccuCCGCCCa -3' miRNA:   3'- -GCGCuGGGUG-----UCGCGCUG---------------CC--------------GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	383	0.66	0.595413
	Target:  5'- gGCGcauCCCGCGGCGCc----CCGCCCc -3' miRNA:   3'- gCGCu--GGGUGUCGCGcugccGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	54391	0.66	0.595413
	Target:  5'- gGCG-CCCGCgGGCaCGGCcggGGCUGCUCa -3' miRNA:   3'- gCGCuGGGUG-UCGcGCUG---CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	147511	0.66	0.585863
	Target:  5'- gGUGGCCCcgaGGCGcCGucuuCGcGCCGCCg -3' miRNA:   3'- gCGCUGGGug-UCGC-GCu---GC-CGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	46676	0.66	0.585863
	Target:  5'- gGCaGCuCCGCuccgauaugaGGCGCGACGG-CGCUCu -3' miRNA:   3'- gCGcUG-GGUG----------UCGCGCUGCCgGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	56428	0.66	0.585863
	Target:  5'- uGCGGUCCGCcaGGCGCcgGGCGaucGUCGCCCc -3' miRNA:   3'- gCGCUGGGUG--UCGCG--CUGC---CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	49545	0.66	0.595413
	Target:  5'- uCGCcGCCCACGaCGCGcUGGCCaUCCa -3' miRNA:   3'- -GCGcUGGGUGUcGCGCuGCCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	83289	0.66	0.592546
	Target:  5'- aCGCgGAUCCA-GGCGCaggcagcucucggaGACGGaCCGCCa -3' miRNA:   3'- -GCG-CUGGGUgUCGCG--------------CUGCC-GGCGGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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