miRNA display CGI

Results 1 - 20 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	95124	0.65	0.642442
	Target:  5'- gGCGGCUCugGGgGCGGaccgucccggGGCCcuacaaaGCCCg -3' miRNA:   3'- gCGCUGGGugUCgCGCUg---------CCGG-------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	127284	0.65	0.641481
	Target:  5'- cCGCGcCCCGCgccgacgggAGCGCGugcaucgggcccCGGCUGCgCg -3' miRNA:   3'- -GCGCuGGGUG---------UCGCGCu-----------GCCGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	100803	0.65	0.642442
	Target:  5'- uCG-GGCCCGaagaccucguucuCGGCGCuGACgaccgcggGGCUGCCCa -3' miRNA:   3'- -GCgCUGGGU-------------GUCGCG-CUG--------CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	1776	0.65	0.641481
	Target:  5'- cCGCGcCCCGCgccgacgggAGCGCGugcaucgggcccCGGCUGCgCg -3' miRNA:   3'- -GCGCuGGGUG---------UCGCGCu-----------GCCGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	121228	0.65	0.642442
	Target:  5'- aCGUGGCCCACGaguccuuugccacGgGgGGCG-UCGCCCc -3' miRNA:   3'- -GCGCUGGGUGU-------------CgCgCUGCcGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	26280	0.65	0.641481
	Target:  5'- gCGCGGgugcCCCGCGGCGacaggggaaggucgGgggucggcgggguucGCGGCCGCUCg -3' miRNA:   3'- -GCGCU----GGGUGUCGCg-------------C---------------UGCCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	24035	0.65	0.642442
	Target:  5'- gGUGAUCCGucguugcUAG-GCGACGggggacGCCGCCCc -3' miRNA:   3'- gCGCUGGGU-------GUCgCGCUGC------CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	44641	0.65	0.64052
	Target:  5'- cCGCGGCCCcuucuccgaccccgGCGGgGcCGACucGCCGCgCg -3' miRNA:   3'- -GCGCUGGG--------------UGUCgC-GCUGc-CGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	149544	0.65	0.642442
	Target:  5'- gGUGAUCCGucguugcUAG-GCGACGggggacGCCGCCCc -3' miRNA:   3'- gCGCUGGGU-------GUCgCGCUGC------CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	49837	0.66	0.585863
	Target:  5'- gCGCGcCCCGCuc--CGAC-GCCGCCCc -3' miRNA:   3'- -GCGCuGGGUGucgcGCUGcCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	126437	0.66	0.585863
	Target:  5'- gCGCGccgaGCCCGCcGCGCGcuccCGGCUguggagGCCUa -3' miRNA:   3'- -GCGC----UGGGUGuCGCGCu---GCCGG------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	19984	0.66	0.585863
	Target:  5'- gGCGAUCgACAccucggcaaagcGCGCGGCG-CCGUCUc -3' miRNA:   3'- gCGCUGGgUGU------------CGCGCUGCcGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	151810	0.66	0.585863
	Target:  5'- gGCGccuucuacGCCCGCuacCGCGACGGguaCGCCa -3' miRNA:   3'- gCGC--------UGGGUGuc-GCGCUGCCg--GCGGg -5'
21606	5'	-63.5	NC_004812.1	+	56428	0.66	0.585863
	Target:  5'- uGCGGUCCGCcaGGCGCcgGGCGaucGUCGCCCc -3' miRNA:   3'- gCGCUGGGUG--UCGCG--CUGC---CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	138972	0.66	0.585863
	Target:  5'- gGCGACCgAagcccCGGCacCGACGGCggagcgguuCGCCCg -3' miRNA:   3'- gCGCUGGgU-----GUCGc-GCUGCCG---------GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	91526	0.66	0.585863
	Target:  5'- cCGgGGCCUGCGGaCGCGAgccCGcGuCCGCCg -3' miRNA:   3'- -GCgCUGGGUGUC-GCGCU---GC-C-GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	130644	0.66	0.585863
	Target:  5'- gGCcGCCCggggACGGCgGCGuCGGCCcgcgguccggGCCCg -3' miRNA:   3'- gCGcUGGG----UGUCG-CGCuGCCGG----------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	137073	0.66	0.585863
	Target:  5'- uCGCGAUCCACcGCGCccuGAC-GCCggGCUCg -3' miRNA:   3'- -GCGCUGGGUGuCGCG---CUGcCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	50069	0.66	0.585863
	Target:  5'- cCGCG-CCCGCugcgagguggGGCGCGugcUGGCCGUg- -3' miRNA:   3'- -GCGCuGGGUG----------UCGCGCu--GCCGGCGgg -5'
21606	5'	-63.5	NC_004812.1	+	37457	0.66	0.585863
	Target:  5'- gCGUGGuccagUCCGCGGgGCGguACGGCCGgUCg -3' miRNA:   3'- -GCGCU-----GGGUGUCgCGC--UGCCGGCgGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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