miRNA display CGI


Results 1 - 20 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 127730 0.8 0.0877
Target:  5'- cCGCGGCCCGCggccagcgcacgcgcGGCGCGGCGGCgggGUCCg -3'
miRNA:   3'- -GCGCUGGGUG---------------UCGCGCUGCCGg--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 76270 0.81 0.072862
Target:  5'- gCGCGccGCCUcgACGGCGCGcGCGGCCGCCUc -3'
miRNA:   3'- -GCGC--UGGG--UGUCGCGC-UGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 3876 0.81 0.072862
Target:  5'- cCGCGGCCCGCAaGCGCccGGCcuccgccuccgaGGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGU-CGCG--CUG------------CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 40202 0.81 0.074717
Target:  5'- gCGCgGGCCCGCAGCGgauCGGCGaCCGCCCg -3'
miRNA:   3'- -GCG-CUGGGUGUCGC---GCUGCcGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 50432 0.81 0.074717
Target:  5'- gCGCGAgauCCUGCGGCGCGA-GGCCGCCg -3'
miRNA:   3'- -GCGCU---GGGUGUCGCGCUgCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 8353 0.81 0.076616
Target:  5'- gCGCGGccgcCCCACcGCGuCGGCGGCCGCCg -3'
miRNA:   3'- -GCGCU----GGGUGuCGC-GCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 103262 0.81 0.076616
Target:  5'- gCGCaGGCgCGCgGGgGCGACGGCCGCCCc -3'
miRNA:   3'- -GCG-CUGgGUG-UCgCGCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 67778 0.81 0.080354
Target:  5'- gGCGGCCCGgGGCGCgGGCGGCUucggggggggcggGCCCg -3'
miRNA:   3'- gCGCUGGGUgUCGCG-CUGCCGG-------------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 100701 0.81 0.080556
Target:  5'- gGCGugUCGCAGCGCGACcGUCGCCa -3'
miRNA:   3'- gCGCugGGUGUCGCGCUGcCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 18326 0.81 0.072679
Target:  5'- cCGCGACCaccgcccgcagggCGCGGCGCGcgaccGCGGCCGCCg -3'
miRNA:   3'- -GCGCUGG-------------GUGUCGCGC-----UGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 134853 0.82 0.069285
Target:  5'- gGCGACCgACGGCGCGucgGCGGCagaCGCCCc -3'
miRNA:   3'- gCGCUGGgUGUCGCGC---UGCCG---GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 129444 0.82 0.069285
Target:  5'- gGCGGCggCACGGCGCGcGCGGCCGCCa -3'
miRNA:   3'- gCGCUGg-GUGUCGCGC-UGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 153129 0.85 0.041689
Target:  5'- cCGCGGCCCGCcGCGCuGACGGCgcgacCGCCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCG-CUGCCG-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 117375 0.84 0.04501
Target:  5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3'
miRNA:   3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 128137 0.83 0.055178
Target:  5'- cCGCGGCCCA-GGCGCGGCGGCgGCgCg -3'
miRNA:   3'- -GCGCUGGGUgUCGCGCUGCCGgCGgG- -5'
21606 5' -63.5 NC_004812.1 + 27761 0.83 0.05805
Target:  5'- cCGCGGCCCGCAgGgGCgGGCGGCCcaGCCCg -3'
miRNA:   3'- -GCGCUGGGUGU-CgCG-CUGCCGG--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 1227 0.82 0.059389
Target:  5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3'
miRNA:   3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 126061 0.82 0.064234
Target:  5'- gGCGACgCGCcGCGCGACGcCCGCCCg -3'
miRNA:   3'- gCGCUGgGUGuCGCGCUGCcGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 152447 0.82 0.065877
Target:  5'- cCGCGggcgucaucGCCgCGCAGCGCcgccuGGCGGCCGCCCu -3'
miRNA:   3'- -GCGC---------UGG-GUGUCGCG-----CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 9755 0.82 0.065877
Target:  5'- cCGCcaccaGGCCCGCGGCGCGccgGCGGCCGCgCg -3'
miRNA:   3'- -GCG-----CUGGGUGUCGCGC---UGCCGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.