miRNA display CGI


Results 1 - 20 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 40158 1.1 0.000669
Target:  5'- cCGCGACCCACAGCGCGACGGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGUCGCGCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 13512 0.89 0.021918
Target:  5'- gCGgGGCCCACGGCGUGACGGCCgggucgcacgGCCCg -3'
miRNA:   3'- -GCgCUGGGUGUCGCGCUGCCGG----------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 124002 0.87 0.027933
Target:  5'- uGCGacGCCCGCGGCGCcuacgacccguacacGACGGCCGCCCu -3'
miRNA:   3'- gCGC--UGGGUGUCGCG---------------CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 153129 0.85 0.041689
Target:  5'- cCGCGGCCCGCcGCGCuGACGGCgcgacCGCCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCG-CUGCCG-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 27621 0.85 0.041689
Target:  5'- cCGCGGCCCGCcGCGCuGACGGCgcgacCGCCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCG-CUGCCG-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 81732 0.85 0.042769
Target:  5'- gGCGAgaCGCGGCGCcgGACGGCCGCCCu -3'
miRNA:   3'- gCGCUggGUGUCGCG--CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 45203 0.84 0.043875
Target:  5'- gCGCGGCCgGCAGCGaGACGGCgUGCCCg -3'
miRNA:   3'- -GCGCUGGgUGUCGCgCUGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 117375 0.84 0.04501
Target:  5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3'
miRNA:   3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 148276 0.84 0.04501
Target:  5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3'
miRNA:   3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 128137 0.83 0.055178
Target:  5'- cCGCGGCCCA-GGCGCGGCGGCgGCgCg -3'
miRNA:   3'- -GCGCUGGGUgUCGCGCUGCCGgCGgG- -5'
21606 5' -63.5 NC_004812.1 + 139766 0.83 0.055178
Target:  5'- cCGCGACCgCGCgccuaAGgGCGGCGGCCGCCg -3'
miRNA:   3'- -GCGCUGG-GUG-----UCgCGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 2629 0.83 0.055178
Target:  5'- cCGCGGCCCA-GGCGCGGCGGCgGCgCg -3'
miRNA:   3'- -GCGCUGGGUgUCGCGCUGCCGgCGgG- -5'
21606 5' -63.5 NC_004812.1 + 27761 0.83 0.05805
Target:  5'- cCGCGGCCCGCAgGgGCgGGCGGCCcaGCCCg -3'
miRNA:   3'- -GCGCUGGGUGU-CgCG-CUGCCGG--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 1227 0.82 0.059389
Target:  5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3'
miRNA:   3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 32128 0.82 0.059389
Target:  5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3'
miRNA:   3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 61113 0.82 0.062631
Target:  5'- gGCGcCCCGCGGCGCGcCGGC-GCCCg -3'
miRNA:   3'- gCGCuGGGUGUCGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 62350 0.82 0.064234
Target:  5'- gCGCGcGCCCGCGGCGCGugGGUCGgcgcgaacCCCa -3'
miRNA:   3'- -GCGC-UGGGUGUCGCGCugCCGGC--------GGG- -5'
21606 5' -63.5 NC_004812.1 + 26939 0.82 0.064234
Target:  5'- cCGCGggcucaucGCCgCGCAGCGCcgccuGGCGGCCGCCCu -3'
miRNA:   3'- -GCGC--------UGG-GUGUCGCG-----CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 126061 0.82 0.064234
Target:  5'- gGCGACgCGCcGCGCGACGcCCGCCCg -3'
miRNA:   3'- gCGCUGgGUGuCGCGCUGCcGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 553 0.82 0.064234
Target:  5'- gGCGACgCGCcGCGCGACGcCCGCCCg -3'
miRNA:   3'- gCGCUGgGUGuCGCGCUGCcGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.