miRNA display CGI


Results 1 - 20 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 46 0.76 0.156358
Target:  5'- gGCGGgCCGCGGgCGCGGCGGCgcggCGCCa -3'
miRNA:   3'- gCGCUgGGUGUC-GCGCUGCCG----GCGGg -5'
21606 5' -63.5 NC_004812.1 + 80 0.68 0.490127
Target:  5'- gCGCGcACUCGCgagggacgggccggGGCGCGcGCGGggccgggagcCCGCCCg -3'
miRNA:   3'- -GCGC-UGGGUG--------------UCGCGC-UGCC----------GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 131 0.7 0.383324
Target:  5'- uCGCGAgUgCGC-GCGCGugGcGCCGCgCCg -3'
miRNA:   3'- -GCGCU-GgGUGuCGCGCugC-CGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 167 0.8 0.095682
Target:  5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 383 0.66 0.595413
Target:  5'- gGCGcauCCCGCGGCGCc----CCGCCCc -3'
miRNA:   3'- gCGCu--GGGUGUCGCGcugccGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 442 0.68 0.466193
Target:  5'- gCGCGcGCCCGC--CGCGAgcccgGGCCGCCg -3'
miRNA:   3'- -GCGC-UGGGUGucGCGCUg----CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 464 0.68 0.510957
Target:  5'- gCGCGuCCCGCGcccCGCGucCGcGCgGCCCg -3'
miRNA:   3'- -GCGCuGGGUGUc--GCGCu-GC-CGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 488 0.68 0.491923
Target:  5'- aCGCGccugcugcccgaACUCACGGcCGCcGCGGCCggggcggGCCCg -3'
miRNA:   3'- -GCGC------------UGGGUGUC-GCGcUGCCGG-------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 551 0.72 0.297653
Target:  5'- cCGCcucccGCCC-CGGCGCGcGCGGCCGCg- -3'
miRNA:   3'- -GCGc----UGGGuGUCGCGC-UGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 553 0.82 0.064234
Target:  5'- gGCGACgCGCcGCGCGACGcCCGCCCg -3'
miRNA:   3'- gCGCUGgGUGuCGCGCUGCcGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 577 0.68 0.474988
Target:  5'- -nCGuCCCGCGGCGCGGCccCCgGCCCc -3'
miRNA:   3'- gcGCuGGGUGUCGCGCUGccGG-CGGG- -5'
21606 5' -63.5 NC_004812.1 + 666 0.68 0.483866
Target:  5'- cCGCG-CCCggGCGGCGCGAgGGgaGCgCg -3'
miRNA:   3'- -GCGCuGGG--UGUCGCGCUgCCggCGgG- -5'
21606 5' -63.5 NC_004812.1 + 691 0.75 0.18422
Target:  5'- cCGCGGCCCGgccuccuCGGCGCGGCaGCCcgggcgccgGCCCc -3'
miRNA:   3'- -GCGCUGGGU-------GUCGCGCUGcCGG---------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 855 0.71 0.345721
Target:  5'- gCGCGugucCCCGCGGcCGCGAgccCCGCCCg -3'
miRNA:   3'- -GCGCu---GGGUGUC-GCGCUgccGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 929 0.66 0.585863
Target:  5'- gCGCGccgaGCCCGCcGCGCGcuccCGGCUguggagGCCUa -3'
miRNA:   3'- -GCGC----UGGGUGuCGCGCu---GCCGG------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 1021 0.74 0.238222
Target:  5'- cCGCGccCCCGCgAGgGCc-CGGCCGCCCg -3'
miRNA:   3'- -GCGCu-GGGUG-UCgCGcuGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 1112 0.72 0.278696
Target:  5'- aCGCGACCgC-CGGCGaggcaGAagcCGGCCGCCa -3'
miRNA:   3'- -GCGCUGG-GuGUCGCg----CU---GCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 1146 0.72 0.310838
Target:  5'- gGCucCCCgGCGGCGCGAgccCGGCCcCCCg -3'
miRNA:   3'- gCGcuGGG-UGUCGCGCU---GCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 1227 0.82 0.059389
Target:  5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3'
miRNA:   3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 1352 0.73 0.275022
Target:  5'- cCGCcggaaGGCCgGCuaugcaaacgccguGCGCGACGGcCCGCCCc -3'
miRNA:   3'- -GCG-----CUGGgUGu-------------CGCGCUGCC-GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.