miRNA display CGI

Results 41 - 60 of 1515 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	33499	0.66	0.633794
	Target:  5'- cCGCcGCCgACGGCaccggacucuccGCGcCGGCCccGCCCc -3' miRNA:   3'- -GCGcUGGgUGUCG------------CGCuGCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	39212	0.66	0.633794
	Target:  5'- aGCGAgCgcaGCAGCGggcCGGCGccGCCGCCg -3' miRNA:   3'- gCGCUgGg--UGUCGC---GCUGC--CGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	101440	0.66	0.633794
	Target:  5'- gGgGGCCgGgGGCGCcggcaccgaGugGGCCGUCa -3' miRNA:   3'- gCgCUGGgUgUCGCG---------CugCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	15108	0.66	0.633794
	Target:  5'- aGCG-CCUGguGCGCcgguACGGCggCGCCCc -3' miRNA:   3'- gCGCuGGGUguCGCGc---UGCCG--GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	7840	0.66	0.633794
	Target:  5'- gGCGGCUCucuCGGgGCGGgGGUCGgUCg -3' miRNA:   3'- gCGCUGGGu--GUCgCGCUgCCGGCgGG- -5'
21606	5'	-63.5	NC_004812.1	+	155213	0.66	0.633794
	Target:  5'- gGCGGCgagagggggCGCGGCGCGggGCGGgCCGUCg -3' miRNA:   3'- gCGCUGg--------GUGUCGCGC--UGCC-GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	69846	0.66	0.632833
	Target:  5'- uCGCG-CCCGCGucgcgcuGCGCcAUGGCCGacgcggaccCCCg -3' miRNA:   3'- -GCGCuGGGUGU-------CGCGcUGCCGGC---------GGG- -5'
21606	5'	-63.5	NC_004812.1	+	108839	0.66	0.632833
	Target:  5'- uCGCGagccgacGCCCcCAGCGCcGCGGCgcugaccucguuCGCCg -3' miRNA:   3'- -GCGC-------UGGGuGUCGCGcUGCCG------------GCGGg -5'
21606	5'	-63.5	NC_004812.1	+	46960	0.66	0.630911
	Target:  5'- aCGUaGAUCCgcaGCAGCGCgGACGGgcgguugucauggcCCGCCg -3' miRNA:   3'- -GCG-CUGGG---UGUCGCG-CUGCC--------------GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	140326	0.66	0.62995
	Target:  5'- uGCGGuCUCuucuguucgucguCGGCGCGugGGUgGCCg -3' miRNA:   3'- gCGCU-GGGu------------GUCGCGCugCCGgCGGg -5'
21606	5'	-63.5	NC_004812.1	+	99074	0.66	0.624184
	Target:  5'- uCGaCGGuCCCGCA-CGUGGCGGa-GCCCc -3' miRNA:   3'- -GC-GCU-GGGUGUcGCGCUGCCggCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	93719	0.66	0.624184
	Target:  5'- -uUGACCCGgAGCcgggcuccGCGGCagacggGGCCGCCg -3' miRNA:   3'- gcGCUGGGUgUCG--------CGCUG------CCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	31854	0.66	0.624184
	Target:  5'- gCGcCGGCuCCACAGCcagccGgGGCGGUCuCCCc -3' miRNA:   3'- -GC-GCUG-GGUGUCG-----CgCUGCCGGcGGG- -5'
21606	5'	-63.5	NC_004812.1	+	143637	0.66	0.624184
	Target:  5'- gCGCGGCCCcgGGCGCGGaGcGCgCGUUCg -3' miRNA:   3'- -GCGCUGGGugUCGCGCUgC-CG-GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	58343	0.66	0.624184
	Target:  5'- uCGCG-UCCAcCAGCGCG-CGGgucCCGgCCu -3' miRNA:   3'- -GCGCuGGGU-GUCGCGCuGCC---GGCgGG- -5'
21606	5'	-63.5	NC_004812.1	+	100374	0.66	0.624184
	Target:  5'- gGCG-CCCGCcgccggggGGCGCGA-GGCCaccgGCCg -3' miRNA:   3'- gCGCuGGGUG--------UCGCGCUgCCGG----CGGg -5'
21606	5'	-63.5	NC_004812.1	+	5816	0.66	0.624184
	Target:  5'- uGCGGggCGCGGCGggcucugcgggcCGGCGGCgCGCUCg -3' miRNA:   3'- gCGCUggGUGUCGC------------GCUGCCG-GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	1514	0.66	0.624184
	Target:  5'- nCGCG--CCGCcGCGCGAgGGCaugccgccgcCGCCCc -3' miRNA:   3'- -GCGCugGGUGuCGCGCUgCCG----------GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	127022	0.66	0.624184
	Target:  5'- nCGCG--CCGCcGCGCGAgGGCaugccgccgcCGCCCc -3' miRNA:   3'- -GCGCugGGUGuCGCGCUgCCG----------GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	77068	0.66	0.624184
	Target:  5'- nCGCGcGCCUcgggcgACAGCucguccgugaGCuuGGCGGCCGCCa -3' miRNA:   3'- -GCGC-UGGG------UGUCG----------CG--CUGCCGGCGGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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