Results 41 - 60 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 31244 | 0.66 | 0.723613 |
Target: 5'- uGCGUcCACGCGCUCgccaCCC-UCaCUCUCg -3' miRNA: 3'- -CGCAuGUGCGCGGG----GGGcAGcGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 95783 | 0.66 | 0.723613 |
Target: 5'- uGCGa--GCGCGCCCgCCGgcaguUCgGUUCUCg -3' miRNA: 3'- -CGCaugUGCGCGGGgGGC-----AG-CGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 411 | 0.66 | 0.723613 |
Target: 5'- ---cGCGCGCagGCCUUCCGcgcgcggCGCUCUCg -3' miRNA: 3'- cgcaUGUGCG--CGGGGGGCa------GCGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 130108 | 0.66 | 0.723613 |
Target: 5'- gGCGUACuGC-CGCgCCgCGUCGCccagCUCg -3' miRNA: 3'- -CGCAUG-UGcGCGgGGgGCAGCGa---GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 343 | 0.66 | 0.723613 |
Target: 5'- uGCGUcCACGCGCUCgccaCCC-UCaCUCUCg -3' miRNA: 3'- -CGCAuGUGCGCGGG----GGGcAGcGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 147913 | 0.66 | 0.723613 |
Target: 5'- cGCGga-GgGCGUCCCgCCGUCGCa--- -3' miRNA: 3'- -CGCaugUgCGCGGGG-GGCAGCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 17508 | 0.66 | 0.723613 |
Target: 5'- aCGUcGCcgACGCGCCCUCgGUCGCg--- -3' miRNA: 3'- cGCA-UG--UGCGCGGGGGgCAGCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 71976 | 0.66 | 0.723613 |
Target: 5'- cGCGggaggcuCACGCGCCCCggggcuggggcgCgGUCG-UCUCg -3' miRNA: 3'- -CGCau-----GUGCGCGGGG------------GgCAGCgAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 126434 | 0.66 | 0.723613 |
Target: 5'- ---cGCGCGCGCCgagCCCGcCGCgcgCUCc -3' miRNA: 3'- cgcaUGUGCGCGGg--GGGCaGCGa--GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 465 | 0.66 | 0.714065 |
Target: 5'- cGCGUcC-CGCGCCCCgCGUcCGCg--- -3' miRNA: 3'- -CGCAuGuGCGCGGGGgGCA-GCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 35266 | 0.66 | 0.714065 |
Target: 5'- cGCGUgcaacaugGCGCGCGCCCUggCCGagGCgUCg- -3' miRNA: 3'- -CGCA--------UGUGCGCGGGG--GGCagCG-AGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 90495 | 0.66 | 0.714065 |
Target: 5'- gGCGgcgGCGCcuGCGaCCCCCGcCuGCUCUUc -3' miRNA: 3'- -CGCa--UGUG--CGCgGGGGGCaG-CGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 20352 | 0.66 | 0.714065 |
Target: 5'- gGCGaaaGCGCGCCUCCgcaaaGUCGCgCUUg -3' miRNA: 3'- -CGCaugUGCGCGGGGGg----CAGCGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 4365 | 0.66 | 0.714065 |
Target: 5'- cGCGUgcaacaugGCGCGCGCCCUggCCGagGCgUCg- -3' miRNA: 3'- -CGCA--------UGUGCGCGGGG--GGCagCG-AGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 125973 | 0.66 | 0.714065 |
Target: 5'- cGCGUcC-CGCGCCCCgCGUcCGCg--- -3' miRNA: 3'- -CGCAuGuGCGCGGGGgGCA-GCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 31752 | 0.66 | 0.714065 |
Target: 5'- gGCGgggGCGCgGCGCCCgCCCcaCGCcaccgaguUCUCg -3' miRNA: 3'- -CGCa--UGUG-CGCGGG-GGGcaGCG--------AGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 34930 | 0.66 | 0.714065 |
Target: 5'- cCGUcCucuCGCGCCgCCCGcCGCUC-Cg -3' miRNA: 3'- cGCAuGu--GCGCGGgGGGCaGCGAGaG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 125078 | 0.66 | 0.714065 |
Target: 5'- cGCGUGCagaccGCGUGCCUCCgGgCGCUg-- -3' miRNA: 3'- -CGCAUG-----UGCGCGGGGGgCaGCGAgag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 5053 | 0.66 | 0.711188 |
Target: 5'- cGCGaggGCGcCGCGCCCCcggccccggccccgCCGUCGC-Cg- -3' miRNA: 3'- -CGCa--UGU-GCGCGGGG--------------GGCAGCGaGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 130562 | 0.66 | 0.711188 |
Target: 5'- cGCGaggGCGcCGCGCCCCcggccccggccccgCCGUCGC-Cg- -3' miRNA: 3'- -CGCa--UGU-GCGCGGGG--------------GGCAGCGaGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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