miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 5713 0.66 0.733088
Target:  5'- gGCGaGCGCGCcgaccuCCCCCUGUguCUCUCu -3'
miRNA:   3'- -CGCaUGUGCGc-----GGGGGGCAgcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 5747 0.68 0.645868
Target:  5'- cGCacACACGCGCCUCCgGcCcCUCUCc -3'
miRNA:   3'- -CGcaUGUGCGCGGGGGgCaGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 6007 0.66 0.751788
Target:  5'- cGCGUcgGCGCgcggcgGCGCCgCCCCGUCGa---- -3'
miRNA:   3'- -CGCA--UGUG------CGCGG-GGGGCAGCgagag -5'
21658 3' -60.5 NC_004812.1 + 7047 0.73 0.348955
Target:  5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 7249 0.71 0.464349
Target:  5'- aCGUGaccgGCgGCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- cGCAUg---UG-CGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 7644 0.68 0.636024
Target:  5'- ----cCGCGCGCCUCgCCGacgaccCGCUCUCg -3'
miRNA:   3'- cgcauGUGCGCGGGG-GGCa-----GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 7731 0.66 0.751788
Target:  5'- cCGggAUcCGCGCCCgUCGUC-CUCUCg -3'
miRNA:   3'- cGCa-UGuGCGCGGGgGGCAGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 8704 0.67 0.685066
Target:  5'- gGCGggACGCccuccGCGCCCCCC-UCGCg--- -3'
miRNA:   3'- -CGCa-UGUG-----CGCGGGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 8889 0.67 0.655701
Target:  5'- cGCGUcauCACGUacaGCCCCCCG-CGC-Ca- -3'
miRNA:   3'- -CGCAu--GUGCG---CGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 10431 0.7 0.49067
Target:  5'- cGCGUcCAcCGCGUCCucaccuacucgcaCCCGUCGCcgcUCUCg -3'
miRNA:   3'- -CGCAuGU-GCGCGGG-------------GGGCAGCG---AGAG- -5'
21658 3' -60.5 NC_004812.1 + 10986 0.67 0.665516
Target:  5'- cCGUGCugGCGCgCCCCGgCGgaC-Ca -3'
miRNA:   3'- cGCAUGugCGCGgGGGGCaGCgaGaG- -5'
21658 3' -60.5 NC_004812.1 + 11199 0.68 0.605523
Target:  5'- cGCGcaaguacUACACGCGCuCCUCCGacggaCGCaUCUCc -3'
miRNA:   3'- -CGC-------AUGUGCGCG-GGGGGCa----GCG-AGAG- -5'
21658 3' -60.5 NC_004812.1 + 11466 0.66 0.710228
Target:  5'- aCGUACACGacgcacacguacaGCCCgCCGcUCGC-CUCc -3'
miRNA:   3'- cGCAUGUGCg------------CGGGgGGC-AGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 11986 0.68 0.604541
Target:  5'- cGCGaugGCGCGCGUCCCgCCGUCaaaaGCgcagacgaccugCUCg -3'
miRNA:   3'- -CGCa--UGUGCGCGGGG-GGCAG----CGa-----------GAG- -5'
21658 3' -60.5 NC_004812.1 + 13079 0.67 0.665516
Target:  5'- cGCGgguCA-GCGCCCCCaugCGCUCg- -3'
miRNA:   3'- -CGCau-GUgCGCGGGGGgcaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 14941 0.68 0.645868
Target:  5'- cGCGUGCAUGacgagGCCCaggUCGUCGUcCUCg -3'
miRNA:   3'- -CGCAUGUGCg----CGGGg--GGCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 15072 0.69 0.586903
Target:  5'- gGCGgcgACACGuCGCCgCCCGcCgGCUCg- -3'
miRNA:   3'- -CGCa--UGUGC-GCGGgGGGCaG-CGAGag -5'
21658 3' -60.5 NC_004812.1 + 15124 0.69 0.577144
Target:  5'- uUGUaGCGCGCGUCCggCCgCGUCGC-CUCg -3'
miRNA:   3'- cGCA-UGUGCGCGGG--GG-GCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 15179 0.68 0.636024
Target:  5'- aCGUgGCGCGcCGCCCUCCGggccUCGCUgCUg -3'
miRNA:   3'- cGCA-UGUGC-GCGGGGGGC----AGCGA-GAg -5'
21658 3' -60.5 NC_004812.1 + 15293 0.67 0.684091
Target:  5'- -gGUACACGCGCCUcacgucgggggggUCCGUCuucuGCUC-Ca -3'
miRNA:   3'- cgCAUGUGCGCGGG-------------GGGCAG----CGAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.