miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 109 0.69 0.567422
Target:  5'- ---cGCGCGCGCCCcggCCCGUCcCUCg- -3'
miRNA:   3'- cgcaUGUGCGCGGG---GGGCAGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 218 0.67 0.684091
Target:  5'- cGgGU-CGCGCagccccgGCCCCCgCGgcccCGCUCUCc -3'
miRNA:   3'- -CgCAuGUGCG-------CGGGGG-GCa---GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 343 0.66 0.723613
Target:  5'- uGCGUcCACGCGCUCgccaCCC-UCaCUCUCg -3'
miRNA:   3'- -CGCAuGUGCGCGGG----GGGcAGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 411 0.66 0.723613
Target:  5'- ---cGCGCGCagGCCUUCCGcgcgcggCGCUCUCg -3'
miRNA:   3'- cgcaUGUGCG--CGGGGGGCa------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 465 0.66 0.714065
Target:  5'- cGCGUcC-CGCGCCCCgCGUcCGCg--- -3'
miRNA:   3'- -CGCAuGuGCGCGGGGgGCA-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 479 0.67 0.704453
Target:  5'- uGCGUgcGCACGCGCCUgCUGccCGaaCUCa -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCa-GCgaGAG- -5'
21658 3' -60.5 NC_004812.1 + 558 0.66 0.760995
Target:  5'- cGCGccGCGCGaCGCCCgCCCGUCccGCg--- -3'
miRNA:   3'- -CGCa-UGUGC-GCGGG-GGGCAG--CGagag -5'
21658 3' -60.5 NC_004812.1 + 624 0.68 0.616336
Target:  5'- cGCGaGCACGCGggcugcaaCCCCGagGCUCUg -3'
miRNA:   3'- -CGCaUGUGCGCgg------GGGGCagCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 926 0.66 0.723613
Target:  5'- ---cGCGCGCGCCgagCCCGcCGCgcgCUCc -3'
miRNA:   3'- cgcaUGUGCGCGGg--GGGCaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 1354 0.71 0.473344
Target:  5'- gGCGUccGC-CGCGCCCCCCcucggccCGCcCUCg -3'
miRNA:   3'- -CGCA--UGuGCGCGGGGGGca-----GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 1378 0.67 0.704453
Target:  5'- cCGUGCGCGacggccCGCCCCgCGcCGCgcccccUCUCg -3'
miRNA:   3'- cGCAUGUGC------GCGGGGgGCaGCG------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 1798 0.68 0.596692
Target:  5'- cGCGUGCAuCGgGCCCCggCUGcgCGC-CUCg -3'
miRNA:   3'- -CGCAUGU-GCgCGGGG--GGCa-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 2060 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 3434 0.69 0.577144
Target:  5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3'
miRNA:   3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5'
21658 3' -60.5 NC_004812.1 + 4028 0.71 0.429299
Target:  5'- cGCGUcCucuCGCGCCgCCCGcCGCUC-Cg -3'
miRNA:   3'- -CGCAuGu--GCGCGGgGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 4249 0.68 0.606505
Target:  5'- gGCGgcgGCG-GCGCCCgCCGcggcggCGUUCUCg -3'
miRNA:   3'- -CGCa--UGUgCGCGGGgGGCa-----GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 4365 0.66 0.714065
Target:  5'- cGCGUgcaacaugGCGCGCGCCCUggCCGagGCgUCg- -3'
miRNA:   3'- -CGCA--------UGUGCGCGGGG--GGCagCG-AGag -5'
21658 3' -60.5 NC_004812.1 + 4600 0.66 0.723613
Target:  5'- gGCGUACuGC-CGCgCCgCGUCGCccagCUCg -3'
miRNA:   3'- -CGCAUG-UGcGCGgGGgGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 4903 0.7 0.510155
Target:  5'- gGCG-GCGCGCGCgCgCCGcCGCUCg- -3'
miRNA:   3'- -CGCaUGUGCGCGgGgGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 5053 0.66 0.711188
Target:  5'- cGCGaggGCGcCGCGCCCCcggccccggccccgCCGUCGC-Cg- -3'
miRNA:   3'- -CGCa--UGU-GCGCGGGG--------------GGCAGCGaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.