miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 81482 1.11 0.000934
Target:  5'- gGCGUACACGCGCCCCCCGUCGCUCUCg -3'
miRNA:   3'- -CGCAUGUGCGCGGGGGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 148399 0.84 0.074472
Target:  5'- cGCGUccgACGCGgGCCCCCgGcCGCUCUCg -3'
miRNA:   3'- -CGCA---UGUGCgCGGGGGgCaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 117498 0.84 0.074472
Target:  5'- cGCGUccgACGCGgGCCCCCgGcCGCUCUCg -3'
miRNA:   3'- -CGCA---UGUGCgCGGGGGgCaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 17071 0.79 0.162585
Target:  5'- cGCGg--ACGCGCCCCCCGUggCGCUgUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCA--GCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 123364 0.78 0.170716
Target:  5'- gGCGgGgACGCGCCCCCCGUC-CUC-Cg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGGCAGcGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 154265 0.78 0.170716
Target:  5'- gGCGgGgACGCGCCCCCCGUC-CUC-Cg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGGCAGcGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 102117 0.77 0.206967
Target:  5'- cCGUGC-CGCcgGCCCCgCCGUCGCUgUCg -3'
miRNA:   3'- cGCAUGuGCG--CGGGG-GGCAGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 52393 0.76 0.227478
Target:  5'- gGCacACACGCuccuuCCCCCCGcUCGCUCUCg -3'
miRNA:   3'- -CGcaUGUGCGc----GGGGGGC-AGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 106137 0.76 0.232867
Target:  5'- gGCGUccACACGCGCCCgCCGagGCcgagCUCg -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 72749 0.76 0.238364
Target:  5'- gGCGgcaGCGcCGCCCCCCGcCGCUCc- -3'
miRNA:   3'- -CGCaugUGC-GCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 119741 0.75 0.261442
Target:  5'- cGCGUACuCGC-CCCCCCG-CGC-CUCc -3'
miRNA:   3'- -CGCAUGuGCGcGGGGGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 99027 0.75 0.261442
Target:  5'- gGCGgGCcuCGCGCgCCCCGUCucgGCUCUCu -3'
miRNA:   3'- -CGCaUGu-GCGCGgGGGGCAG---CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 73414 0.75 0.267489
Target:  5'- cGCGgcCGcCGCGCCUCCCGcCGCgagCUCc -3'
miRNA:   3'- -CGCauGU-GCGCGGGGGGCaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 55697 0.75 0.273648
Target:  5'- gGCGguggGCGCGCGCCUgcaCCCG-CGCUCg- -3'
miRNA:   3'- -CGCa---UGUGCGCGGG---GGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 64730 0.75 0.279921
Target:  5'- cGCGgGCAUGCGCgCCCCCGggcCGUaCUCg -3'
miRNA:   3'- -CGCaUGUGCGCG-GGGGGCa--GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 55820 0.75 0.286307
Target:  5'- cGCG-GCGCaGCGCCuCUUCGUCGCUCUg -3'
miRNA:   3'- -CGCaUGUG-CGCGG-GGGGCAGCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 41825 0.75 0.286307
Target:  5'- uGUGUACACGCcCUCCCCGUaCGCcUUCg -3'
miRNA:   3'- -CGCAUGUGCGcGGGGGGCA-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 117736 0.74 0.312998
Target:  5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3'
miRNA:   3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 148637 0.74 0.312998
Target:  5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3'
miRNA:   3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 44052 0.74 0.319959
Target:  5'- cGCGUcggACgGCGCGCCCCCC--CGCUCg- -3'
miRNA:   3'- -CGCA---UG-UGCGCGGGGGGcaGCGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.