miRNA display CGI


Results 1 - 20 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 4028 0.71 0.429299
Target:  5'- cGCGUcCucuCGCGCCgCCCGcCGCUC-Cg -3'
miRNA:   3'- -CGCAuGu--GCGCGGgGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 62911 0.73 0.334227
Target:  5'- cGCGUGCACGCGCggaacgggcgCgCCCUGUCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCG----------G-GGGGCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 106234 0.73 0.341534
Target:  5'- -gGUGCACGCGCCCCCggCGUCGg---- -3'
miRNA:   3'- cgCAUGUGCGCGGGGG--GCAGCgagag -5'
21658 3' -60.5 NC_004812.1 + 132556 0.73 0.348955
Target:  5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 39592 0.73 0.36337
Target:  5'- --cUGCACGCGCCCCUCGUucauguaCGCcagCUCg -3'
miRNA:   3'- cgcAUGUGCGCGGGGGGCA-------GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 53786 0.73 0.36414
Target:  5'- gGCGUggAgGCGCGCCgCCCCGUggagaggucgCGCUCg- -3'
miRNA:   3'- -CGCA--UgUGCGCGG-GGGGCA----------GCGAGag -5'
21658 3' -60.5 NC_004812.1 + 71299 0.73 0.36414
Target:  5'- gGCGccAC-CGaGCCCCCCGUCGCgagaCUCg -3'
miRNA:   3'- -CGCa-UGuGCgCGGGGGGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 144102 0.73 0.371902
Target:  5'- gGCGaACAUGCGCCCCCCaGUacggGC-CUCc -3'
miRNA:   3'- -CGCaUGUGCGCGGGGGG-CAg---CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 67487 0.73 0.371902
Target:  5'- cGCGgGCugGCGCCCgcgggCCGUCG-UCUCg -3'
miRNA:   3'- -CGCaUGugCGCGGGg----GGCAGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 63962 0.74 0.319959
Target:  5'- cGUGUACACGUGCCUgCUG-CGC-CUCg -3'
miRNA:   3'- -CGCAUGUGCGCGGGgGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 44052 0.74 0.319959
Target:  5'- cGCGUcggACgGCGCGCCCCCC--CGCUCg- -3'
miRNA:   3'- -CGCA---UG-UGCGCGGGGGGcaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 117736 0.74 0.312998
Target:  5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3'
miRNA:   3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 117498 0.84 0.074472
Target:  5'- cGCGUccgACGCGgGCCCCCgGcCGCUCUCg -3'
miRNA:   3'- -CGCA---UGUGCgCGGGGGgCaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 123364 0.78 0.170716
Target:  5'- gGCGgGgACGCGCCCCCCGUC-CUC-Cg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGGCAGcGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 102117 0.77 0.206967
Target:  5'- cCGUGC-CGCcgGCCCCgCCGUCGCUgUCg -3'
miRNA:   3'- cGCAUGuGCG--CGGGG-GGCAGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 119741 0.75 0.261442
Target:  5'- cGCGUACuCGC-CCCCCCG-CGC-CUCc -3'
miRNA:   3'- -CGCAUGuGCGcGGGGGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 73414 0.75 0.267489
Target:  5'- cGCGgcCGcCGCGCCUCCCGcCGCgagCUCc -3'
miRNA:   3'- -CGCauGU-GCGCGGGGGGCaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 64730 0.75 0.279921
Target:  5'- cGCGgGCAUGCGCgCCCCCGggcCGUaCUCg -3'
miRNA:   3'- -CGCaUGUGCGCG-GGGGGCa--GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 41825 0.75 0.286307
Target:  5'- uGUGUACACGCcCUCCCCGUaCGCcUUCg -3'
miRNA:   3'- -CGCAUGUGCGcGGGGGGCA-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 55820 0.75 0.286307
Target:  5'- cGCG-GCGCaGCGCCuCUUCGUCGCUCUg -3'
miRNA:   3'- -CGCaUGUG-CGCGG-GGGGCAGCGAGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.